View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_107 (Length: 286)

Name: NF8971_low_107
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_107
NF8971_low_107
[»] chr1 (1 HSPs)
chr1 (1-286)||(42270715-42271000)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 42270715 - 42271000
Alignment:
Q  1 attcaagcctcactgttgaatcctctcgaagagtattcgtcgagccgcatgcaccaccttcctccaacgacttcatggccgaacatgcttcggataacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270715 attcaagcctcactgttgaatcctctcgaagagtattcgtcgagccgcatgcaccaccttcctccaacgacttcatggccgaacatgcttcggataacca 42270814  T
Q  101 actatggagtcatgttttatcgtaagtttcgtatattgttaattattacaattgtgctatatgttatgatgaaaactagtctcaatatcacgaaataatg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42270815 actatggagtcatgttttatcgtaagtttcgtaaattgttaattattacaattgtgctatatgttataatgaaaactagtctcaatatcacgaaataatg 42270914  T
Q  201 tgcgttagaatttcagaacacaggnnnnnnnnttcatatgctattggctgaaaacatggatctgtccaatgatattattttgtgac 286  Q
    |||||||||||||||| ||| |||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42270915 tgcgttagaatttcagtacaaaggaaaaaaaattcatatgctattgactgaaaacatggatctgtccaatgatattattttgtgac 42271000  T

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