View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_110 (Length: 283)

Name: NF8971_low_110
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_110
NF8971_low_110
[»] chr2 (13 HSPs)
chr2 (7-227)||(8368718-8368938)
chr2 (7-227)||(8400472-8400692)
chr2 (7-227)||(8422049-8422269)
chr2 (101-220)||(8394781-8394900)
chr2 (101-220)||(8395024-8395143)
chr2 (101-220)||(8406429-8406548)
chr2 (101-220)||(8412549-8412668)
chr2 (101-220)||(8434647-8434766)
chr2 (101-218)||(8404487-8404604)
chr2 (104-180)||(8375372-8375448)
chr2 (104-180)||(8439655-8439731)
chr2 (156-197)||(8431629-8431670)
chr2 (101-189)||(8417770-8417858)
[»] chr4 (1 HSPs)
chr4 (173-219)||(55331437-55331483)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 8368718 - 8368938
Alignment:
Q  7 agaagcagagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 106  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368718 agaagctgagaataaaagtgcagaagataatttgagggctaaaagaggagcaccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 8368817  T
Q  107 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368818 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 8368917  T
Q  207 ttgcatagagttgagtaatgg 227  Q
    |||||||||||||||||||||    
T  8368918 ttgcatagagttgagtaatgg 8368938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 8400692 - 8400472
Alignment:
Q  7 agaagcagagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 106  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400692 agaagctgagaataaaagtgctgaagataatttgagggctaaaagaggagcaccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 8400593  T
Q  107 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400592 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 8400493  T
Q  207 ttgcatagagttgagtaatgg 227  Q
    |||||||||||||||||||||    
T  8400492 ttgcatagagttgagtaatgg 8400472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 8422269 - 8422049
Alignment:
Q  7 agaagcagagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 106  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422269 agaagctgagaataaaagtgcggaagataatttgagggctaaaagaggagcaccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 8422170  T
Q  107 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422169 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 8422070  T
Q  207 ttgcatagagttgagtaatgg 227  Q
    |||||||||||||||||||||    
T  8422069 ttgcatagagttgagtaatgg 8422049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 8394900 - 8394781
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 200  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8394900 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8394801  T
Q  201 caagaattgcatagagttga 220  Q
    | |  | |||||||||||||    
T  8394800 ccaagactgcatagagttga 8394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 8395143 - 8395024
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 200  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8395143 gtgagagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8395044  T
Q  201 caagaattgcatagagttga 220  Q
    | |  | |||||||||||||    
T  8395043 ccaagactgcatagagttga 8395024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 8406429 - 8406548
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 200  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8406429 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8406528  T
Q  201 caagaattgcatagagttga 220  Q
    | |  | |||||||||||||    
T  8406529 ccaagactgcatagagttga 8406548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 8412549 - 8412668
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 200  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8412549 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8412648  T
Q  201 caagaattgcatagagttga 220  Q
    | |  | |||||||||||||    
T  8412649 ccaagactgcatagagttga 8412668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 8434647 - 8434766
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 200  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8434647 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8434746  T
Q  201 caagaattgcatagagttga 220  Q
    | |  | |||||||||||||    
T  8434747 ccaagactgcatagagttga 8434766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 8404487 - 8404604
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 200  Q
    ||||| || |||||||||||||||||||||| ||| || |||||||| || |||||||  || | ||||| ||||||||| |||||||| |||||||  |    
T  8404487 gtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaattctgtctgatacagcct 8404586  T
Q  201 caagaattgcatagagtt 218  Q
    |   ||||||||||||||    
T  8404587 ccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 8375448 - 8375372
Alignment:
Q  104 agagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttc 180  Q
    ||||| ||||||||||||||||| || ||||| || |||||||| |  || ||||||||||||||||||||||||||    
T  8375448 agagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgcatttc 8375372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 8439655 - 8439731
Alignment:
Q  104 agagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttc 180  Q
    ||||| ||||||||||||||||| || ||||| || ||||||||    || ||||||||||||||||||||||||||    
T  8439655 agagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgcatttc 8439731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 8431629 - 8431670
Alignment:
Q  156 gttcgccaatgttttgatgcatttctattctgtcggatacag 197  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  8431629 gttcgccaatgttgtgatgcatttctattctgtctgatacag 8431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 8417770 - 8417858
Alignment:
Q  101 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtc 189  Q
    |||||||| |||||||||||||| || || ||||| || |||||||| |  ||| |||| | |||||| ||||||||||| ||||||||    
T  8417770 gtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgcatttcaattctgtc 8417858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 55331437 - 55331483
Alignment:
Q  173 tgcatttctattctgtcggatacagattcaagaattgcatagagttg 219  Q
    |||||||| ||||||||||||||||| || | |||||||||||||||    
T  55331437 tgcatttcgattctgtcggatacagaatctaaaattgcatagagttg 55331483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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