View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_118 (Length: 253)
Name: NF8971_low_118
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_118 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6188861 - 6189095
Alignment:
| Q |
1 |
ctcaacgaggcacctgttggggagctgcagtaaccagtgaattgaaatggcattgctctttgtgatttgggctaaaagaattacaatagaatttcgtaca |
100 |
Q |
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| T |
6188861 |
ctcaacgaggcacctgttggggagctgcagtaactagtgaattgaaatggcattgctctttgtgatttgggctaaaagaattacaatagaatttcgtaca |
6188960 |
T |
|
| Q |
101 |
gtcggagtatatacacattggagtaatcattattctgtcaagaatcatgcgcgataaattatcttggctcttaaggaaatggcctgctttttgcaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6188961 |
gtcggagtatatacacattggagtaatcattattctgtcaagaatcatgcgcgataaattatcttggctcttaaggaaatggcctgctttttgcaacttt |
6189060 |
T |
|
| Q |
201 |
tttattagattacatgtaatattgattatagaact |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6189061 |
tttattagattacatgtaatattgattatagaact |
6189095 |
T |
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