View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_127 (Length: 247)
Name: NF8971_low_127
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_127 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 41846156 - 41846304
Alignment:
| Q |
87 |
tcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcct |
186 |
Q |
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| T |
41846156 |
tcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcct |
41846255 |
T |
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| Q |
187 |
caatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtcca |
235 |
Q |
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| T |
41846256 |
caatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtcca |
41846304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 41848723 - 41848655
Alignment:
| Q |
2 |
aagactagtcgtccataaagtcagtgtatattttccgaatcgaatcgaatcacacactatagtctctcataatc |
75 |
Q |
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| T |
41848723 |
aagactagtcatccataaagtcagtgtatattttccgaatcg-----aatcacacactatagtctctcataatc |
41848655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 26890842 - 26890703
Alignment:
| Q |
87 |
tcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcct |
186 |
Q |
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||||| ||||| ||||||||||| | ||| |||||||| ||||| || || | | |||||||| | ||||||| ||||||||| |||||||| |||| |
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| T |
26890842 |
tcctcaatcattttaacaacatctaccatagttggcctcttctctggctgctgcaccacacaagccaacccaacatgcagcattgacacaagctcttcct |
26890743 |
T |
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| Q |
187 |
caatgttcttgtacctcaaaagttcttgatcaaacacctc |
226 |
Q |
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| T |
26890742 |
caatgttcttgtatcgcagaagttcttgatcaaaaacctc |
26890703 |
T |
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