View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_13 (Length: 778)
Name: NF8971_low_13
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 19 - 769
Target Start/End: Original strand, 13847765 - 13848525
Alignment:
| Q |
19 |
tctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttctaatctatcaaatat--gtctgtat |
116 |
Q |
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| T |
13847765 |
tctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttctaatctatcaaatatatgtgtgtat |
13847864 |
T |
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| Q |
117 |
tgattgatgttgggtacttgcttcaaatgaggagagag------tctcttttatagtggaaaaaggaaaaatagaaagattccccttagctattggtgta |
210 |
Q |
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| T |
13847865 |
tgattgatgttgggtacttgcttcaaatgaggagagagccacattcccttttatagtggaaaaaggaaaaatagaaagattccccttagctattggtgta |
13847964 |
T |
|
| Q |
211 |
aaacatttttatctnnnnnnnnnnnnnnn-catatgtaattaaacgaaaacaattcttatttaacgcgataaaa-gtgttaaactacattaacaaaataa |
308 |
Q |
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| T |
13847965 |
aaacatttttatctaaaaaaaaatcaaaaacatatgtaattaaacgaaaacacttcttatttaacgcgataaaaagtgttaaactacattaacaaaataa |
13848064 |
T |
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| Q |
309 |
atcacaatttcgttgaatgggttaagttcatatgtgattaatcgctcaatgaagcgcataaactaaatataagaactaaaccactttgaatttggtcggg |
408 |
Q |
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| T |
13848065 |
atcacaatttcgttgaatgggttaagttcatatgtgattaatcggtcaatgaagcgcataaactaattataagaaccaaaccactttgaatttggtcggg |
13848164 |
T |
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| Q |
409 |
ttggtaggttcaatctagaattaaaaatcaaccaatcaataatataaacccagcattttagattatttgagtcattgggcttatcagatttactcacaca |
508 |
Q |
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| T |
13848165 |
ttggtaggttcaatctagaattaaaaatcaaccaatcaataatataaacccaacattttagattatttgagttattgggcttattagatttactcacaca |
13848264 |
T |
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| Q |
509 |
tcacatgtttgggttcaagtgtggtatcttcctctcttgtgtgtctatagtattaattcgttgttgttctcaacattttttcagatcttcgacaagtggt |
608 |
Q |
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| T |
13848265 |
taacatgtttgggttcaagtgtggtatcttcctctcttgtgtgtctatagtattaattcgttgttgttctcaacattttctcagatcttcgacaagtggt |
13848364 |
T |
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| Q |
609 |
atcatagttgagttatggttgaggctccaggaagaggctccaaatggcatgttccccatatgttccttgatcagcatgcgacaaccctttctcgttgcag |
708 |
Q |
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| T |
13848365 |
atcatagttgagttatggttgaggccctaggaagaggctccaaatggcatgttccccatatgttccttgatcagcatgcgacaaccctttctcgttgcag |
13848464 |
T |
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| Q |
709 |
gtgcaactcaagcaatcgacgaacaatcgatatgattgaaattgagactctgatgtccatc |
769 |
Q |
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| T |
13848465 |
ttgcagctcaagcaatcgactaacaatcgatatgattgaaattgagactcttgtgtccatc |
13848525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 13836499 - 13836584
Alignment:
| Q |
19 |
tctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttctaatctatcaa |
104 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |||||||| |
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| T |
13836499 |
tctaagccaattttccttaggtctgatgaaggaggtgccattgatgctaaatgttggagctgaagtaaatgtttctattctatcaa |
13836584 |
T |
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