View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_132 (Length: 239)
Name: NF8971_low_132
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_132 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 31960239 - 31960439
Alignment:
| Q |
17 |
ttcgtgttcaatgcagggaatccgtgtgcttctctcctcccttctctttcatggtagcaataaaaaatttatgtgcttacgttttgttatgctttggtgt |
116 |
Q |
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| T |
31960239 |
ttcgtgttcaatgcagggaatccgtgtgcttctctcctcccttctctttcatggtagcaataaaaaatttatgtgcttacgttttgttatgctttggtgt |
31960338 |
T |
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| Q |
117 |
cgataatctatcaatagatccggtgaatctacaaaattctgatagtgaaaatttattaaaattgttgtaacctgcatcaagaatgaagtagtatatcatt |
216 |
Q |
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| T |
31960339 |
cgataatctatcaatagatccggtgaatctacaaaattctgatagagaaaatttattaaaattgttgtaacctgcatcaagaatgaagtagtatatcatt |
31960438 |
T |
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| Q |
217 |
c |
217 |
Q |
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| T |
31960439 |
c |
31960439 |
T |
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