View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_138 (Length: 222)
Name: NF8971_low_138
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_138 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 50969141 - 50968958
Alignment:
| Q |
18 |
aatattagggttgagataaacctaacctaatttctaagcttgcagcctcatatataatatgtaaaaagatatatacctctgctcattgattacctttccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50969141 |
aatattagggttgagataaacctaacctaatttctaagcttgcagcctcatatataatatgtaaaaagatatatacctctgctcattgattacctttccc |
50969042 |
T |
|
| Q |
118 |
aaagattcaagtttcttcaacgttgacaaatggtgctgtcagtttgttttaactaccggtatatgtatattcgttcttttgttg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50969041 |
aaagattcaagtttcttcaacgttgacaaatggtgctgtcagtttgttttaactaccggtatatgtatattcgttcttttgttg |
50968958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 50973972 - 50973808
Alignment:
| Q |
18 |
aatattagggttgaga--taaacctaacctaatttctaagcttgcagcctcatatataatatgtaaaaagatatatacctc-tgctcattgattaccttt |
114 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||||||||||| ||| || ||||||||||| ||| |||| |||||| ||||| || ||||||||| |
|
|
| T |
50973972 |
aatattagggttgagaaatagacctaacctagtttctaagcttgccgccgcagatataatatgtgaaaggatagataccttatgctccttaattaccttt |
50973873 |
T |
|
| Q |
115 |
cccaaagattcaagtttcttcaacgttgacaaatggtgctgtcagtttgttttaactaccggtat |
179 |
Q |
| |
|
| |||||||||| |||||||||||| |||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
50973872 |
cgcaaagattcatatttcttcaacgtagacaaatggtgccgttagtttgttttaactacgggtat |
50973808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University