View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_142 (Length: 214)
Name: NF8971_low_142
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_142 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 39460199 - 39460412
Alignment:
| Q |
1 |
caagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||| |
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| T |
39460199 |
caagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataag |
39460298 |
T |
|
| Q |
101 |
cgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
39460299 |
cgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcatca |
39460398 |
T |
|
| Q |
201 |
accttccagaagtt |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39460399 |
accttccagaagtt |
39460412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 39475455 - 39475668
Alignment:
| Q |
1 |
caagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||| |||| |||||| || ||||||||| |
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| T |
39475455 |
caagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataac |
39475554 |
T |
|
| Q |
101 |
cgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatca |
200 |
Q |
| |
|
|| |||||| ||||||| |||| || ||| ||||| ||| |||| || ||||| ||||||||||| ||||| | ||| || |||||| ||||||||| |
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| T |
39475555 |
cgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatca |
39475654 |
T |
|
| Q |
201 |
accttccagaagtt |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39475655 |
accttccagaagtt |
39475668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 39450949 - 39451162
Alignment:
| Q |
1 |
caagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| || |||||| |||||| || ||||||||| |
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| T |
39450949 |
caagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataac |
39451048 |
T |
|
| Q |
101 |
cgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatca |
200 |
Q |
| |
|
|| |||||| ||||||| |||| || ||| ||||| | | | || || ||||| ||||||||||| ||||| | ||| ||||||||| ||||||||| |
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|
| T |
39451049 |
cgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatca |
39451148 |
T |
|
| Q |
201 |
accttccagaagtt |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39451149 |
accttccagaagtt |
39451162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 39464750 - 39464541
Alignment:
| Q |
5 |
atgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcc |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | | ||||||| ||| ||||||||||||||||| |||||| |||||||||||||| | |
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|
| T |
39464750 |
atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc |
39464651 |
T |
|
| Q |
105 |
tccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaacct |
204 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| | || || |||||||||| |||||||||| |||||| || |||||||| | |||||||||| |
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|
| T |
39464650 |
tccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaacct |
39464551 |
T |
|
| Q |
205 |
tccagaagtt |
214 |
Q |
| |
|
|||||||||| |
|
|
| T |
39464550 |
tccagaagtt |
39464541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39471985 - 39472195
Alignment:
| Q |
1 |
caagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| | | | | ||| ||| ||| | || |||||||||||| |||||| |||||||||||| |
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|
| T |
39471985 |
caagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataac |
39472084 |
T |
|
| Q |
101 |
cgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatca |
200 |
Q |
| |
|
|| |||||||||||||| |||| || ||| ||||| ||| ||| || ||||||| |||||||||| ||||| | ||||||||| ||| ||||||||| |
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|
| T |
39472085 |
cgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatca |
39472184 |
T |
|
| Q |
201 |
accttccagaa |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
39472185 |
accttccagaa |
39472195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 39454592 - 39454798
Alignment:
| Q |
5 |
atgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcc |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||| ||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||| | |
|
|
| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
|
| Q |
105 |
tccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaacct |
204 |
Q |
| |
|
||||||||||||| ||||| | ||| | ||| || | || || | ||||| ||| |||||||||||| | ||||||||| || |||||||||||| |
|
|
| T |
39454692 |
tccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaacct |
39454791 |
T |
|
| Q |
205 |
tccagaa |
211 |
Q |
| |
|
||||||| |
|
|
| T |
39454792 |
tccagaa |
39454798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 39470973 - 39470764
Alignment:
| Q |
5 |
atgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcc |
104 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| | | ||||||| ||| || | ||||| || ||| |||||| |||| ||||||||||| |
|
|
| T |
39470973 |
atgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcc |
39470874 |
T |
|
| Q |
105 |
tccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaacct |
204 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||||| |||| || |||| ||||| || ||||||| |||||| ||| ||||||||| | |||||||||| |
|
|
| T |
39470873 |
tctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcatcaacct |
39470774 |
T |
|
| Q |
205 |
tccagaagtt |
214 |
Q |
| |
|
|||||||||| |
|
|
| T |
39470773 |
tccagaagtt |
39470764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 39480325 - 39480451
Alignment:
| Q |
4 |
gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgc |
103 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| || ||| | ||||||| |||||||||||| || |||||| |||||| |||||||||||||| |
|
|
| T |
39480325 |
gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgt |
39480424 |
T |
|
| Q |
104 |
ctccgaataactgtcctagtcatgaaa |
130 |
Q |
| |
|
|||||||||||||| | ||||||||| |
|
|
| T |
39480425 |
ctccgaataactgttttggtcatgaaa |
39480451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 39486408 - 39486521
Alignment:
| Q |
1 |
caagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataac |
100 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| || ||| | ||||||| |||||||||||| ||||| ||| |||||| |||||||||||| |
|
|
| T |
39486408 |
caagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataac |
39486507 |
T |
|
| Q |
101 |
cgcctccgaataac |
114 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
39486508 |
cgtctccgaataac |
39486521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 39458511 - 39458304
Alignment:
| Q |
4 |
gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgc |
103 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||| || ||| | ||||||| ||||||||| || ||||| ||| |||||| |||||||||||||| |
|
|
| T |
39458511 |
gatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgt |
39458412 |
T |
|
| Q |
104 |
ctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaacc |
203 |
Q |
| |
|
|||||||||||| || | ||||||||| | ||| |||||||| || ||||| |||||||||| ||| ||| | ||||||||| |||| || ||| |
|
|
| T |
39458411 |
ctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgtcgacc |
39458312 |
T |
|
| Q |
204 |
ttccagaa |
211 |
Q |
| |
|
|||||||| |
|
|
| T |
39458311 |
ttccagaa |
39458304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 43312730 - 43312626
Alignment:
| Q |
4 |
gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgc |
103 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||| ||| | | ||| ||| ||||||||||||||||| ||| |||| | |||||||||||||| |
|
|
| T |
43312730 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgt |
43312631 |
T |
|
| Q |
104 |
ctccg |
108 |
Q |
| |
|
||||| |
|
|
| T |
43312630 |
ctccg |
43312626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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