View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_147 (Length: 201)
Name: NF8971_low_147
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_147 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 7237743 - 7237913
Alignment:
| Q |
15 |
cacagatcaagtgggcaacccttaaattgaccaaaaagaaaagtattcacttaaaatcattatataaatcaaggattaattacacataaatagaatacaa |
114 |
Q |
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| T |
7237743 |
cacagatcaagtgggcaacacttaaattgaccaaaaagaaaagtattcacttaaaatcattatataaatcaaggattaattacacataaatagaatacaa |
7237842 |
T |
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| Q |
115 |
gttgaaaacaagctgcaccgcctggtcttttgggtggcaaaaccattaagtaaggttttgcagtcaagact |
185 |
Q |
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| T |
7237843 |
gttgacaacaagcttcgccgcttggtcttttgggtggcaaaaccattaagtaaggttttgcagtcaagact |
7237913 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 18670979 - 18671007
Alignment:
| Q |
82 |
atcaaggattaattacacataaatagaat |
110 |
Q |
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| T |
18670979 |
atcaaggattaattacacataaatagaat |
18671007 |
T |
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