View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_21 (Length: 640)

Name: NF8971_low_21
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_21
NF8971_low_21
[»] chr7 (11 HSPs)
chr7 (228-622)||(6969839-6970234)
chr7 (243-471)||(6917964-6918192)
chr7 (233-463)||(6922673-6922903)
chr7 (233-463)||(6955309-6955539)
chr7 (231-457)||(6918496-6918722)
chr7 (7-230)||(6970262-6970484)
chr7 (231-457)||(6923425-6923651)
chr7 (233-428)||(6923678-6923873)
chr7 (7-82)||(21439498-21439573)
chr7 (40-82)||(45987541-45987583)
chr7 (33-82)||(25923563-25923612)
[»] chr1 (2 HSPs)
chr1 (7-82)||(7178362-7178437)
chr1 (33-82)||(25505592-25505641)
[»] chr4 (10 HSPs)
chr4 (14-82)||(30309924-30309992)
chr4 (14-82)||(19113911-19113979)
chr4 (7-81)||(48031730-48031804)
chr4 (33-82)||(33988367-33988416)
chr4 (33-85)||(49926538-49926590)
chr4 (33-85)||(7472897-7472949)
chr4 (40-82)||(19644483-19644525)
chr4 (33-82)||(8934594-8934643)
chr4 (33-82)||(23118928-23118977)
chr4 (33-82)||(23657165-23657214)
[»] chr6 (5 HSPs)
chr6 (10-85)||(33019454-33019529)
chr6 (31-82)||(5086636-5086687)
chr6 (24-82)||(15644216-15644274)
chr6 (33-82)||(504130-504179)
chr6 (33-85)||(8263735-8263787)
[»] chr3 (2 HSPs)
chr3 (7-82)||(20894343-20894418)
chr3 (7-85)||(51144538-51144616)
[»] chr2 (2 HSPs)
chr2 (7-82)||(5325239-5325314)
chr2 (14-85)||(15017148-15017219)
[»] chr8 (1 HSPs)
chr8 (10-82)||(13909104-13909176)
[»] chr5 (2 HSPs)
chr5 (18-81)||(11575293-11575356)
chr5 (33-82)||(22095895-22095944)
[»] scaffold0108 (1 HSPs)
scaffold0108 (34-82)||(10401-10449)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 228 - 622
Target Start/End: Complemental strand, 6970234 - 6969839
Alignment:
Q  228 aagaacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970234 aagaacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggc 6970135  T
Q  328 cctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacacca 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970134 cctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacacca 6970035  T
Q  428 acgaactccttcttggaaaggttaccactttctcttcgctttcatttagttttgcgataactacaattgattttgacatgatctatatgaaatgaacttt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970034 acgaactccttcttggaaaggttaccactttctcttcgctttcatttagttttgcgataactacaattgattttgacatgatctatatgaaatgaacttt 6969935  T
Q  528 taattgatgatgagttttgaaatacaaatatacta-acaaagttattgcctagcgtcgagctaagtgactttgtaacctttgcgtagcatagtaga 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969934 taattgatgatgagttttgaaatacaaatatactacacaaagttattgcctagcgtcgagctaagtgactttgtaacctttgcgtagcatagtaga 6969839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 243 - 471
Target Start/End: Original strand, 6917964 - 6918192
Alignment:
Q  243 agtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacctcaa 342  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  6917964 agtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacctgaa 6918063  T
Q  343 actgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactccttcttg 442  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| ||| | |||||||    
T  6918064 cctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgacttctatggacctcacaccaatgaagttcttcttg 6918163  T
Q  443 gaaaggttaccactttctcttcgctttca 471  Q
    |||||||||||||||||||||||||||||    
T  6918164 gaaaggttaccactttctcttcgctttca 6918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 233 - 463
Target Start/End: Complemental strand, 6922903 - 6922673
Alignment:
Q  233 caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc 332  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6922903 caatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcc 6922804  T
Q  333 taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaa 432  Q
    ||||||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||    
T  6922803 taaacctgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgacatttatggccctcacaccaatgaa 6922704  T
Q  433 ctccttcttggaaaggttaccactttctctt 463  Q
     | ||||||||||||||||||||||||||||    
T  6922703 gttcttcttggaaaggttaccactttctctt 6922673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 233 - 463
Target Start/End: Original strand, 6955309 - 6955539
Alignment:
Q  233 caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc 332  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6955309 caatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcc 6955408  T
Q  333 taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaa 432  Q
    ||||||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||    
T  6955409 taaacctgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgacatttatggccctcacaccaatgaa 6955508  T
Q  433 ctccttcttggaaaggttaccactttctctt 463  Q
     | ||||||||||||||||||||||||||||    
T  6955509 gttcttcttggaaaggttaccactttctctt 6955539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 231 - 457
Target Start/End: Complemental strand, 6918722 - 6918496
Alignment:
Q  231 aacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccct 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  6918722 aacaatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcct 6918623  T
Q  331 cctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacg 430  Q
    ||||| ||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |    
T  6918622 cctaagcctgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggccctcacaccaatg 6918523  T
Q  431 aactccttcttggaaaggttaccactt 457  Q
    || | ||||||||||||||||||||||    
T  6918522 aagttcttcttggaaaggttaccactt 6918496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 6970484 - 6970262
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttatcgttnnnnnnnntaattattt 106  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||         ||| ||||    
T  6970484 tttggtgtttctggacgagtctttgaggcacgccttgtgctaacgaggctcttgttgttaatataatttcatttttgattgttaaaaaaaaaaat-attt 6970386  T
Q  107 tttaattaaagtttgacctttctttgttgtatgacatcagctaattataaatagacctggtggtggcggagatattcacaacttcaattttgtttggcct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970385 tttaattaaagtttgacctttctttgttgtatgacatcagctaattataaatagacctggtggtggcggagatattcacaacttcaattttgtttggcct 6970286  T
Q  207 ttatacatagtactaggatagaag 230  Q
    ||||||||||| ||||||||||||    
T  6970285 ttatacatagtcctaggatagaag 6970262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 231 - 457
Target Start/End: Original strand, 6923425 - 6923651
Alignment:
Q  231 aacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccct 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  6923425 aacaatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcct 6923524  T
Q  331 cctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacg 430  Q
    ||||| ||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| |    
T  6923525 cctaagcctgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggtcctcacaccaatg 6923624  T
Q  431 aactccttcttggaaaggttaccactt 457  Q
    || | ||||||||||||||||||||||    
T  6923625 aagttcttcttggaaaggttaccactt 6923651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 233 - 428
Target Start/End: Complemental strand, 6923873 - 6923678
Alignment:
Q  233 caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc 332  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6923873 caatgacaaaagtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcc 6923774  T
Q  333 taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaa 428  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||    
T  6923773 taaacctgaacctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgacttctatggacctcacaccaa 6923678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 21439498 - 21439573
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||||||||||||| || ||||||||||||| ||||| ||| |||||||||||||||||||| |||||||    
T  21439498 tttggtgtttcttgacgagtctttgaggcacgccttgcgctaatgagactcttgttgttaatataatttcattttt 21439573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 45987583 - 45987541
Alignment:
Q  40 cttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||  ||| ||||||||||||||||||||||||||||    
T  45987583 cttgtgctattgagactcttgttgttaatataattccattttt 45987541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 25923612 - 25923563
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||  ||| ||||||||||||||||||| ||||||||    
T  25923612 ggcacgtcttgtgctattgagactcttgttgttaatataatcccattttt 25923563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 7178437 - 7178362
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  7178437 tttggtgtttcttgacgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataattccattttt 7178362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 25505592 - 25505641
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  25505592 ggcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 25505641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 30309992 - 30309924
Alignment:
Q  14 tttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30309992 tttcttgacgagtctttgaggcacgccttgtgctaacgagactcttgttgttaatataattccattttt 30309924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 19113979 - 19113911
Alignment:
Q  14 tttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    ||||||||||||| || |||||| |||||||||||| ||  ||||||||||||||||||||||||||||    
T  19113979 tttcttgacgagtctttgaggcatgccttgtgctaatgacactcttgttgttaatataattccattttt 19113911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 48031730 - 48031804
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccatttt 81  Q
    |||| ||||||||||| ||| || | ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  48031730 tttgctgtttcttgactagtctttgtggcacgccttgtgctattgagactcttgttgttaatataattccatttt 48031804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 33988367 - 33988416
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  33988367 ggcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 33988416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 49926538 - 49926590
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttat 85  Q
    |||||| |||||||||| ||| ||||||||||||||||||||| |||||||||    
T  49926538 ggcacgtcttgtgctaatgagactcttgttgttaatataattctattttttat 49926590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 7472949 - 7472897
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttat 85  Q
    |||||| |||||||||  ||| |||||||| ||||||||||||||||||||||    
T  7472949 ggcacgtcttgtgctattgagactcttgttattaatataattccattttttat 7472897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 19644525 - 19644483
Alignment:
Q  40 cttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||  ||| ||||||||||||||||||||||||||||    
T  19644525 cttgtgctattgagactcttgttgttaatataattccattttt 19644483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 8934643 - 8934594
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||  ||| || |||||||||||||||||||||||||    
T  8934643 ggcacgtcttgtgctattgagactattgttgttaatataattccattttt 8934594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 23118977 - 23118928
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||  ||| ||||||||||||||||||| ||||||||    
T  23118977 ggcacgtcttgtgctattgagactcttgttgttaatataatcccattttt 23118928  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 23657214 - 23657165
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||  ||| ||||||||||||||||||| ||||||||    
T  23657214 ggcacgtcttgtgctattgagactcttgttgttaatataatcccattttt 23657165  T

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Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 33019529 - 33019454
Alignment:
Q  10 ggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttat 85  Q
    |||||||||||| |||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  33019529 ggtgtttcttgatgagtctttgaggcacgccttgtgctaatgaggctcttgttgttaatataattacattttttat 33019454  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 5086636 - 5086687
Alignment:
Q  31 gaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  5086636 gaggcatgccttgtgctaatgagactcttgttgttaatataattccattttt 5086687  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15644216 - 15644274
Alignment:
Q  24 agttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| | |||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  15644216 agtttttgtggcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 15644274  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 504130 - 504179
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||| |||||||||  ||| ||||||||||||||||||||||||||||    
T  504130 ggcacgtcttgtgctattgagactcttgttgttaatataattccattttt 504179  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 8263787 - 8263735
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttat 85  Q
    |||||| |||||||||  ||| ||||||||||||||||||| |||||||||||    
T  8263787 ggcacgtcttgtgctattgagactcttgttgttaatataatcccattttttat 8263735  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 20894343 - 20894418
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||||||||||||| || |||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  20894343 tttggtgtttcttgacgagtctttgaggcacgccttatgctaatgagactcttgttgttaatataattccattttt 20894418  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 51144616 - 51144538
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttat 85  Q
    |||| |||||||||| |||| || | |||||| |||||||||| ||| |||| |||||| |||||||||||||||||||    
T  51144616 tttgttgtttcttgaggagtcttggtggcacgtcttgtgctaatgagactctggttgtttatataattccattttttat 51144538  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 5325314 - 5325239
Alignment:
Q  7 tttggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  5325314 tttggtgtttcttgacgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataatttcattttt 5325239  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 15017219 - 15017148
Alignment:
Q  14 tttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttttat 85  Q
    ||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  15017219 tttcttgacgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataattccattttttat 15017148  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 13909176 - 13909104
Alignment:
Q  10 ggtgtttcttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    |||||||||||| |||| || |||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  13909176 ggtgtttcttgatgagtctttgaggcacgccttgtgctaataaggctcttgttgttaatataatttcattttt 13909104  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 11575293 - 11575356
Alignment:
Q  18 ttgacgagttttcgaggcacgccttgtgctaacgaggctcttgttgttaatataattccatttt 81  Q
    ||||||||| || ||||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  11575293 ttgacgagtatttgaggcacgctttgtgctaatgagactcttgttgttaatataattccatttt 11575356  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 22095895 - 22095944
Alignment:
Q  33 ggcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    ||||||||||||||||| ||| |||| |||||| ||||||||||||||||    
T  22095895 ggcacgccttgtgctaatgagactctggttgtttatataattccattttt 22095944  T

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Target: scaffold0108 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10449 - 10401
Alignment:
Q  34 gcacgccttgtgctaacgaggctcttgttgttaatataattccattttt 82  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  10449 gcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 10401  T

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