View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_22 (Length: 625)
Name: NF8971_low_22
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Complemental strand, 3637223 - 3636608
Alignment:
| Q |
10 |
gaagcagagaaaaggtaaagggatagacacatacacagttatcagaagttttatgcataactattaagaaaaaggacaaaagattatattgatcgtgaga |
109 |
Q |
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| T |
3637223 |
gaagcaaagaaaaggtaaagggatagacacatacacagttatcagaggttttatgcataactattaagaaaaaggacaaaagattatattgatcgtgaga |
3637124 |
T |
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| Q |
110 |
acaaacctttttgttacatagaataataggaagctgcaagcaagataaggttgaacttctttttccctttgaatttggtggagagggaatatcataaagt |
209 |
Q |
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| T |
3637123 |
acaaacctttttgttacatagaataataggaagctgcaagcaagataaggttgaacttctttttccctttgaatttggtggagagggaatatcataaagt |
3637024 |
T |
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| Q |
210 |
atcaccccaccagaattccttataagtgcttccaactccctttccttctgactagataatccagtgaggaggaactctctacctcgaaatatgaattcat |
309 |
Q |
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| T |
3637023 |
atcaccccaccagaattccttataagtgcttccaactccctttccttctgactagataatccagtgaggaggaactctctacctcgaaatatgaattcat |
3636924 |
T |
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| Q |
310 |
tccttgcacctctgcaataatttgtcaaagaatgtttcatatgaggtgcagaagtggtcaatgtcttggaaacccgttgcctttttgctctaatagatga |
409 |
Q |
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| T |
3636923 |
tccttgcacctctgcaataatctgtcaaagaatgtttcatatgaggtgcagaagtggtcaatgtcttggaaacccgttgcctttttgctctaatagatga |
3636824 |
T |
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| Q |
410 |
acctacattattgcagcgaaaaataagtaatttctacaaaaagtaattcctaaaactgaaagatacatcaaacgaacagagctaaatacatacatttctt |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3636823 |
acctacattattgcagcgaaaaataagtaatttctacaaaaagtaattcctaaaactgaaagatacatcaaacgaacagagctaaatacatacatttttt |
3636724 |
T |
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| Q |
510 |
atctgaagattccaactttgacaatttccttttttgatgaagctcctccactttatctgagaaatgtacttgctttctgactttaacatgtccatcaacg |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636723 |
atctgaagattccaactttgacaatttccttttttgatgaagctcctccactttatctgagaaatgtacttgctttctgactttaacatgtccatcaacg |
3636624 |
T |
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| Q |
610 |
gatttattgcactcaa |
625 |
Q |
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| T |
3636623 |
gatttattgcactcaa |
3636608 |
T |
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