View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_27 (Length: 597)
Name: NF8971_low_27
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 6503972 - 6503384
Alignment:
| Q |
1 |
ggtaccggttttatgatgatactcatattcacttcccttatcggaactccagattggaaagtgaagatgaatttcaccgggaaaaggttacttccggtga |
100 |
Q |
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| T |
6503972 |
ggtaccggttttatgatgatactcatattcacttcccttatcggaactctagattggaaagtgaagatgaatttcaccgggaaaaggttacttccggtga |
6503873 |
T |
|
| Q |
101 |
agtttcccggcgaccggaggtgaaaccagtgccagattctcaaactgaagatgttggaagaaatgttgatcggatatatgaagtggaaacggttgagaaa |
200 |
Q |
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| T |
6503872 |
agtttcccggcgaccggaggtgaaaccagtgccagattctcaaactgaagatgttggaagaaatgttgatccgatgtatgaagtggaaacggttgagaaa |
6503773 |
T |
|
| Q |
201 |
tcggtaatcaatgattctgttgtggagaattcacaaccgccgcctctgcaaccgatacctgcgttgaggaaaaagaaaatcaggagtgcatctatggaaa |
300 |
Q |
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| T |
6503772 |
tcggtaatcaatgattctgttgtggagaattcacaaccgccgcctctgcaaccgatacctgcgttgaggaagaagaaaaccaggagtgcatctatggaaa |
6503673 |
T |
|
| Q |
301 |
acgtggcagcggtgacttctgcggaattttcctctctggtgccggaaccggagctaaatccgcatcggcaaccggctgtgaggaagaagaaaattaggag |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6503672 |
acgtggcagtagtgacttctgcggaattttcctctctggtgccggaaccggagcttaatccgcatcggcaaccggctgcgaggaagaagaaaattaggag |
6503573 |
T |
|
| Q |
401 |
tgaatctgaagtaaacacggcagcggttacttctgcagaattttcttcgccagtgccggaacaggagctaaatccacaactgccggtgatgaggactaaa |
500 |
Q |
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| T |
6503572 |
tgaatctgaagtaaacacggcagcagttacttctgcagaattttcttcgccagtgccggaacaggagctaaatccacaactgccggtgatgaggactaaa |
6503473 |
T |
|
| Q |
501 |
ggtgttcgaggaaatttcaagcgaacaaatcaaccgaaagcgatcgagaaattggaagataatgattttttcgttgagaattatctacc |
589 |
Q |
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| T |
6503472 |
ggtgttcgaggaaatttcaagcgaacaaatcaaccgaaagcgatcgagaaattggaagataatgattttttcgttgagaattatctacc |
6503384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 6504227 - 6504098
Alignment:
| Q |
1 |
ggtaccggttttatgatgatactcatattcacttcccttatcggaactccagattggaaagtgaagatgaatttcaccgggaaaaggttacttccggtga |
100 |
Q |
| |
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|||||||||||||||||||||||| | | | || | ||||||| | | ||||| || ||||||||||||||||||||| | ||||||||||||||| |
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| T |
6504227 |
ggtaccggttttatgatgatactcgtgtaaattttcgttatcggtatccgagatttcaagatgaagatgaatttcaccgggagacggttacttccggtga |
6504128 |
T |
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| Q |
101 |
agtttcccggcgaccggaggtgaaaccagt |
130 |
Q |
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| T |
6504127 |
aactttccggcaaccggaggtgaaaccagt |
6504098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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