View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_28 (Length: 597)
Name: NF8971_low_28
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 207 - 579
Target Start/End: Original strand, 10361441 - 10361813
Alignment:
| Q |
207 |
ctcattaccttttaactccataaaggggaacctagctggtttattcgataatacataataaaacttgcttctcagtcacaagtaaaccaaaatcaagtaa |
306 |
Q |
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| T |
10361441 |
ctcattaccttttaactcctaaaaggggaacctagctggtttattcgttaatacataataaaacttgcttcccagtcacaagtaaaccaaaatcaatcaa |
10361540 |
T |
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| Q |
307 |
aaccagacaagagagctcataccagtatttcaactccctaatctagtaacaatcatgacagcagcgtatgattttgcaaggataaaagcccttgatcgga |
406 |
Q |
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| T |
10361541 |
aaccagacaagagagctcatgccagtatttcaactgcctaatccagtaacaatcatgacagcagcgtatgattttgcaaggataaaagcccttgatcgga |
10361640 |
T |
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| Q |
407 |
gcaaatacacaaattcaattacatctgattcttcttaatgaaatagtaataatgagtcaggtcagctttattaagatagtggtgaatgataatggtttgt |
506 |
Q |
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| T |
10361641 |
gcaaatacacaaattcaattacatctaattcttcttaatgaaatagtaataatgagtcaggtcagctttattaagatagtggtgaatgataatggtttgt |
10361740 |
T |
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| Q |
507 |
ggaagatgaatactcaatgacgtcagctgtttgaacagcaggattttagaaagaaaattacagttggacatac |
579 |
Q |
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| T |
10361741 |
ggaagatgaatactcaatgacgtcagctgtttgaacagcaggattttagaaagaaaattacagttggacatac |
10361813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 10361249 - 10361382
Alignment:
| Q |
17 |
agagcaaacgagcgttcaaactattcattattggattgccaaattttactcaaaaaccaaatgtatgcaatacgtaatgtcagaattgtgttttcacaga |
116 |
Q |
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| T |
10361249 |
agagcaaacgagcgttcaa-ctattcattattggattgccaaattttactcaaaaaccaaatgtatgcaatacgtaatgtcagaattgtgttttcacata |
10361347 |
T |
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| Q |
117 |
cttgtcaattatcatcaaacgaataggatagccag |
151 |
Q |
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| T |
10361348 |
cttgtcaattatcatcaaacgaataggatagccag |
10361382 |
T |
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