View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_30 (Length: 596)
Name: NF8971_low_30
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 2752325 - 2751734
Alignment:
| Q |
1 |
tcagtgttggattcttaaaattgaatcagttattgtaacttgtaatctaagtttgacttcaactataacccttcagttattctcttctcatctcaggttt |
100 |
Q |
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| T |
2752325 |
tcagtgttggattcttaaaattgaatcagttattgtaacttgtaagctaagtttcacttcaactataacccttcagttattctcttctcatctcaggttt |
2752226 |
T |
|
| Q |
101 |
tagcatgacccctgaaacaatcggtcaacaaaaatctgtgtttgatttttatgtcaaggttggttactctttcatttcatgtgttgtttgcttcatctta |
200 |
Q |
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| T |
2752225 |
tagcatgacccctgaaacaatcggtgaacaaaaatctgtgtttgatttttatgtcaaggttggttactctttcatttcatgtgttgtttgcttcatctta |
2752126 |
T |
|
| Q |
201 |
taacttcaattttgctcatctctaatccacatgcaggatgctaagggaggtattgctaatctcgcaacttataagggaaaagttctgctgattgtcaatg |
300 |
Q |
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| T |
2752125 |
taacttcaattttgctcatctctaatccacatgcaggatgctaagggaggtattgctaatctcgcaacttataagggaaaagttctgctgattgtcaatg |
2752026 |
T |
|
| Q |
301 |
ttgcttctcaatggtatctttaattttgtgcaattctttttgttcatcacattaccattgtttcaaatgttcaaaaaatatttacaattctagtttgttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2752025 |
ttgcttctcaatggtatctttaattttgtgcaattctttttgttcatcacattaccattgtttcaattgttcaaaaaatatttacaattctagtttgttg |
2751926 |
T |
|
| Q |
401 |
tttgggattttgagacagcggcttaaccgactccaactatgctgagttgaatcaactgtatgacaagtataaagaccaaggtttgtaatttattaattta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2751925 |
tttgggattttgagacagcggcttaaccgactccaactatgctgagttgaatcaactatatgacaagtataaagaccaaggtttgtaatttattaattta |
2751826 |
T |
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| Q |
501 |
cactcttgcatattgttaattttttctcatttcaaactgtaactatcatatcctttgcataagcatagatatatgaagaaataggatggaat |
592 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2751825 |
cactcttgtatattgttaattttttctcatttcaaactgtaactatcataacctttgcataagcatagatatatgaagaaataggatggaat |
2751734 |
T |
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