View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_31 (Length: 556)

Name: NF8971_low_31
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_31
NF8971_low_31
[»] chr8 (15 HSPs)
chr8 (1-539)||(6322083-6322621)
chr8 (226-539)||(6275216-6275529)
chr8 (1-539)||(6332667-6333188)
chr8 (3-112)||(6275649-6275758)
chr8 (233-539)||(6363855-6364161)
chr8 (270-525)||(6353073-6353328)
chr8 (225-360)||(6289818-6289953)
chr8 (272-525)||(7459971-7460224)
chr8 (29-112)||(6425183-6425266)
chr8 (272-525)||(7471549-7471800)
chr8 (270-363)||(6424909-6425002)
chr8 (29-136)||(6364343-6364449)
chr8 (61-112)||(7460565-7460616)
chr8 (65-117)||(6290396-6290448)
chr8 (272-324)||(6451892-6451944)
[»] chr2 (1 HSPs)
chr2 (237-324)||(42694074-42694161)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 6322621 - 6322083
Alignment:
Q  1 cttgggtgatcctgataagtacgcaaggttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaagggggagaaccggtaggaaacca 100  Q
    ||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6322621 cttgggtgatcctgacaagtacgcacacttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaaggggcagaaccggcaggaaacca 6322522  T
Q  101 gctaaaaaaggtaataattttaaagttctatcttaaattaacggtcctatgatcaaaacattttctctattatgactttaaagttatcgatctttttgct 200  Q
    |||||||||||| ||||||||||||||| || ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6322521 gctaaaaaaggttataattttaaagttccatattaaattaatggtgctgtgatcaaaacattttctctattatgactttaaagttatcgatctttttgct 6322422  T
Q  201 aatacttgctaatgcgtgtcttcaattttgtatgtgaacagatcctaaaagtgtgagacgggacgactttgtttacgttccaagagatgaagcatttggt 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6322421 agtacttgctaatgcgtgtcttcaattttgtatgtgaacagatcctaaaagtgagagacgggacgactttgtttacgttccaagagatgaagcatttggt 6322322  T
Q  301 cacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattacattacaactcaataagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6322321 cacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattacattacaactcaataagc 6322222  T
Q  401 cagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagccccataccatttttcaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6322221 cagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtatacttagcaaacttagccccataccatttttcaa 6322122  T
Q  501 ggaactcttccgaactgatggtgaatcggccctaaagtt 539  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6322121 ggaactcttccgaactgatggtgaatcggccctaaagtt 6322083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 226 - 539
Target Start/End: Complemental strand, 6275529 - 6275216
Alignment:
Q  226 ttttgtatgtgaacagatcctaaaagtgtgagacgggacgactttgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttg 325  Q
    |||||||| ||  ||||||||||||||| |||||||  ||| | | ||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  6275529 ttttgtatttgtgcagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttg 6275430  T
Q  326 tttacatactcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgt 425  Q
    ||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  6275429 tttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgt 6275330  T
Q  426 gcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaa 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6275329 gcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagccctataccatttttcaaggaactcttccgaactgatggtgaa 6275230  T
Q  526 tcggccctaaagtt 539  Q
    ||||||||||||||    
T  6275229 tcggccctaaagtt 6275216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 6333188 - 6332667
Alignment:
Q  1 cttgggtgatcctgataagtacgcaaggttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaagggggagaaccggtaggaaacca 100  Q
    ||||||||||||||| ||| | | ||| ||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||| |||||||      
T  6333188 cttgggtgatcctgacaagaaagaaagcttggctcgtcccgttgttggaggatccaataacttgccttaccctcgaagggggagaaccggcaggaaacat 6333089  T
Q  101 gctaaaaaaggtaataattttaaagttctatcttaaattaacggtcctatgatcaaaacattttctctattatgactttaaagttatcgatctttttgct 200  Q
    |||||||||||| ||||  || | | |||||||||| |||| ||||||||||||||||||||| |||||| |||| ||||||| ||| |||||| |||||    
T  6333088 gctaaaaaaggtgataaactttatgctctatcttaagttaaaggtcctatgatcaaaacatttcctctat-atgattttaaagatattgatcttgttgct 6332990  T
Q  201 aatacttgctaatgcgtgtcttcaattttgtatgtgaacagatcctaaaagtgtgagacgggacgactttgtttacgttccaagagatgaagcatttggt 300  Q
    |||              |||||| |||| |||||| | |||||  |||||||| ||| |||  ||||||||||||| |||||||||||||| |||||||     
T  6332989 aat--------------gtcttctattt-gtatgtta-cagatgataaaagtgagagtcggagcgactttgtttacattccaagagatgaatcatttggc 6332906  T
Q  301 cacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattacattacaactcaataagc 400  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||| | | ||||||||||||| ||||||| ||||||||||| ||||| |||    
T  6332905 cacttgaagtcttcagactttcttgtttatatactgaaatcagcatctcaaaatgttatacctcaattacgatctgcacttacattacaattcaatcagc 6332806  T
Q  401 cagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagccccataccatttttcaa 500  Q
    |||| ||||| |  ||||| ||||| || ||||| ||| ||||||| ||| |||||||||||| | ||||||||||| |||||||||||||| | ||| |    
T  6332805 cagagtttaacacttttgaagatgtccgttcattatatcatggtggaattgaattacctactaatgcacttagcaaaattagccccataccagtgttcca 6332706  T
Q  501 ggaactcttccgaactgatggtgaatcggccctaaagtt 539  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  6332705 ggaactcctcagaactgatggtgaatcggccctaaagtt 6332667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 6275758 - 6275649
Alignment:
Q  3 tgggtgatcctgataagtacgcaaggttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaagggggagaaccggtaggaaaccagc 102  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  6275758 tgggtgatcctgacaagaaagcaagcttggctcgtcccgttattggaggatccaacaccttgccttaccctcgaagagggagaaccggcaggaaaccagc 6275659  T
Q  103 taaaaaaggt 112  Q
    ||| ||||||    
T  6275658 taagaaaggt 6275649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 233 - 539
Target Start/End: Complemental strand, 6364161 - 6363855
Alignment:
Q  233 tgtgaacagatcctaaaagtgtgagacgggacgactttgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttgtttacat 332  Q
    |||||||||||||||| |||| ||| ||    |||  ||||||| | |||||||||||| ||||||| |||   ||||| ||||| ||||||||| ||||    
T  6364161 tgtgaacagatcctaagagtgagagtcgaagtgacactgtttacctcccaagagatgaatcatttggacacacaaagtcatcagactttcttgttcacat 6364062  T
Q  333 actcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatca 432  Q
    ||||||||| || ||||||| | ||||||||| ||||  ||||  | ||||||||||| || || |||| || ||||| | |||||| |||||||| ||     
T  6364061 actcaaatctgcatctcaaaatgtcatacctcgattaagatctatagttacattacaattccatgagcctgagtttaacacctttgaagatgtgcgctcg 6363962  T
Q  433 ttttatgatggtgggattaaattacctactagtacacttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccc 532  Q
     | ||||| ||||| || |   | ||||||  || ||| ||  |||||||||| |||||||| ||||||||||| |||||||||||||||||| |||| |    
T  6363961 ctctatgaaggtggaatcaggcttcctactgatatactaagtgaacttagcccaataccattgttcaaggaacttttccgaactgatggtgaagcggcac 6363862  T
Q  533 taaagtt 539  Q
    | |||||    
T  6363861 ttaagtt 6363855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 270 - 525
Target Start/End: Complemental strand, 6353328 - 6353073
Alignment:
Q  270 tgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaatta 369  Q
    ||||||| |||||||||||||| | ||||| |||   ||||| ||||| |||||||||||||||||||||||||| ||||||| | ||||||||||| |     
T  6353328 tgtttaccttccaagagatgaatcttttggacacacaaagtcatcagactttcttgtttacatactcaaatcagcatctcaaaatgtcatacctcaactg 6353229  T
Q  370 caatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacac 469  Q
      ||||| | ||||||||||||||||||| || || ||||| | |||| | |||||||| ||  | || || ||||| |||||  | ||||||  |  ||    
T  6353228 agatctgtagttacattacaactcaataaccctgagtttaacacctttcaagatgtgcgctctctctacgagggtggaattaagcttcctactgatgtac 6353129  T
Q  470 ttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaa 525  Q
    | ||| |  |||| || |||||||| ||||||||||| |||||| |||||||||||    
T  6353128 taagccagattagtccaataccattgttcaaggaacttttccgatctgatggtgaa 6353073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 360
Target Start/End: Complemental strand, 6289953 - 6289818
Alignment:
Q  225 attttgtatgtgaacagatcctaaaagtgtgagacgggacgactttgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttctt 324  Q
    ||||||||  ||||||||||||||||||| ||| ||| ||| |||||||||| |||||||||||||| |||||| ||||  |||||||||||| ||||||    
T  6289953 attttgtacatgaacagatcctaaaagtgagagtcggaacggctttgtttacattccaagagatgaatcatttgatcacaagaagtcttcagaatttctt 6289854  T
Q  325 gtttacatactcaaatcagcttctcaaagtttcata 360  Q
    | | || |||| |||||||| ||||||  |||||||    
T  6289853 gataacctactgaaatcagcatctcaagatttcata 6289818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 525
Target Start/End: Complemental strand, 7460224 - 7459971
Alignment:
Q  272 tttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaattaca 371  Q
    |||||||||||||||||||| ||||||||||||||||||| || || ||||||| |||  |||||||||||||  |||| ||  |||||||| | ||       
T  7460224 tttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttcttggttatgtactcaaatcagcaactcacagagtcatacctaatttgag 7460125  T
Q  372 atctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacactt 471  Q
    ||||  |  |||||||||||||||||| || || ||||| | |||||| ||| | || ||  | || |||||||| |||||  | ||||||  |  |||     
T  7460124 atctaaagctacattacaactcaataaccctgagtttaacacctttgaagatatacgctctctctacgatggtggaattaagcttcctactgatgtacta 7460025  T
Q  472 agcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaa 525  Q
    ||| |  ||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  7460024 agccagattagcccaataccattgttcaaagaactttttcgaactgatggtgaa 7459971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 6425266 - 6425183
Alignment:
Q  29 ttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaagggggagaaccggtaggaaaccagctaaaaaaggt 112  Q
    |||| |||||| ||| ||||||||||   |||||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  6425266 ttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaaaaccagctaaaaaaggt 6425183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 525
Target Start/End: Complemental strand, 7471800 - 7471549
Alignment:
Q  272 tttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaattaca 371  Q
    |||||||||||||||||||| ||||||||||||||||||| || || ||||||| |||  |||||||||||||  |||| ||  |||| ||| | ||       
T  7471800 tttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttcttggttatgtactcaaatcagcaactcagag--tcatgcctaatttgag 7471703  T
Q  372 atctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacactt 471  Q
    ||||  | ||||||||||||||||||| || || ||||| | |||||| |||   |||||  | || |||||||| |||||  | ||||||  |  |||     
T  7471702 atctaaagttacattacaactcaataaccccgagtttaacacctttgaagatacacgatctctctacgatggtggaattaagcttcctactgatgtacta 7471603  T
Q  472 agcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaa 525  Q
    |||||  ||||||| |||||||| ||||| ||||  || |||||||||||||||    
T  7471602 agcaagattagcccaataccattgttcaaagaacattttcgaactgatggtgaa 7471549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 6425002 - 6424909
Alignment:
Q  270 tgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacct 363  Q
    ||||||| ||||||||||||| |||||||| |||   ||||||||||| ||||||| || ||||||||||||||| ||||||| | ||||||||    
T  6425002 tgtttaccttccaagagatgaggcatttggacacacaaagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcatacct 6424909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 6364449 - 6364343
Alignment:
Q  29 ttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaagggggagaaccggtaggaaaccagctaaaaaaggtaataattttaaagttc 128  Q
    ||||||||||| ||| ||||||||||   |||| | |||||||||||||| ||||||||||| |||||| |||||   |||||| |||| ||| | ||||    
T  6364449 ttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataacttt-acgttc 6364351  T
Q  129 tatcttaa 136  Q
    ||||||||    
T  6364350 tatcttaa 6364343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 7460616 - 7460565
Alignment:
Q  61 cttgccttaccctcgaagggggagaaccggtaggaaaccagctaaaaaaggt 112  Q
    ||||||||||||||||||||| |||||||| || |||||| |||||||||||    
T  7460616 cttgccttaccctcgaaggggaagaaccggcagaaaaccatctaaaaaaggt 7460565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 6290448 - 6290396
Alignment:
Q  65 ccttaccctcgaagggggagaaccggtaggaaaccagctaaaaaaggtaataa 117  Q
    ||||||||||||||||| |||||||| ||| |||||||||| |||||| ||||    
T  6290448 ccttaccctcgaaggggaagaaccggcagggaaccagctaagaaaggttataa 6290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 6451944 - 6451892
Alignment:
Q  272 tttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttctt 324  Q
    |||| |||||||||||||||   ||||||||||||||||| ||||| ||||||    
T  6451944 tttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt 6451892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 42694161 - 42694074
Alignment:
Q  237 aacagatcctaaaagtgtgagacgggacgactttgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttctt 324  Q
    ||||||||||||||||| |||  ||   || ||||| ||  |||||||||||||||| |||||||||||||| || ||||||||||||    
T  42694161 aacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttctt 42694074  T

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