View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_33 (Length: 555)
Name: NF8971_low_33
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 12 - 539
Target Start/End: Original strand, 6131256 - 6131783
Alignment:
| Q |
12 |
attattctgcaaaatcacattaacaagcaatgcatacattccaaaagactttcttcttcacaaacaaataatcttctcctccaattataacccactcccg |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6131256 |
attatcctgcaaaatcacattaacaagcaatgcatacattccaaaagactttcttcttcacaaacaaataatcttctcctccaattataacccactcccg |
6131355 |
T |
|
| Q |
112 |
taatctaaatttattcgcaacaatgacatcttaaacattagaaacactataaaaccgtgaaaaaccttcgccaagagaacgaccctccaacaaaaatgtc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6131356 |
taatctaaatttattcgcaacaatgacatcttaaacattagaaacactataaaaccgtgaaaaaccttcgccaagagaacgaccctccaacaaaaatgtc |
6131455 |
T |
|
| Q |
212 |
tccaaaatagagtattttcaccatttcccactacacacaccaaattatccttcccaaagcattccccatacataacagacatatggtcatacctccatca |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6131456 |
tccgaaatagagtattttcaccatttcccactacacacaccaaattatccttcccaaagcattccccatacataacagacatatgatcatacctccatca |
6131555 |
T |
|
| Q |
312 |
caataatatatatttttatatctaaaaccatatagaacaacccttctcaatcccccattaaccttcagcatcatttaccaagtaacactaaattaatttt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
6131556 |
caataatatatatttttatatctaaaaccatatagaacaacccttctcaatcccccattaaccttcaacaccatttaccaagtaacactaaattaatttt |
6131655 |
T |
|
| Q |
412 |
ctttaaatgcctaacaataagtcctcctttaattctatctagacaaatgactgtttgagtgtttgtttttagcatatctctagtatacaagggtgataga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6131656 |
ctttaaatgcctaacaataagtcctcctttaattctatctagacaaatgactgtttgagtgtttgtttttagcatatctctagtatacaagggtgataga |
6131755 |
T |
|
| Q |
512 |
gaaatttgagttgtgtgatcattttatt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6131756 |
gaaatttgagttgtgtgatcattttatt |
6131783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University