View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_35 (Length: 550)
Name: NF8971_low_35
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_35 |
 | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0552 (2 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 21 - 533
Target Start/End: Original strand, 6838762 - 6839274
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838762 |
ggattggcggaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
6838861 |
T |
|
| Q |
121 |
ctattatatgatgaaccagacgacnnnnnnntgggacgctgtcatgtagtagatgaggaggatgttattgtttctggcaacgatgataataatgtctgtg |
220 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6838862 |
ctatcatatgatgaaccagacgacaaaaaaatggaacgctgtcatgtagtagatgaggaggatgttattgtttctggcaacgatgataataatgtcagtg |
6838961 |
T |
|
| Q |
221 |
tttccagtggtgatgatgaaaccatcaatcgttttggagaggaaactatgaatcacatccagattaccaagcacggcgatgggttatgtgttgatgtcgt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838962 |
tttccagtggtgatgatgaaaccatcaatcgctttggagaggaaactatgaaccacatccagattaccaagcacggcgatgggttatgtgttgatgtcgt |
6839061 |
T |
|
| Q |
321 |
gggaccgatacagctagtaccacatgaccttgaccagcctgtagaggcagtagctgaggagattcatccagctgaagaacaacctgatcaggagcaccat |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6839062 |
gggaccgatacagctagtaccaaatgaccttgaccagcctgtagaggcagtagctgaggagattcatccagctgaagaacaacctgatcaggagcaccat |
6839161 |
T |
|
| Q |
421 |
gttcctccacctgagtgtgagcctgaacagcatgcaacagtagcatctgcgaccatagaacctactctaggcgctcagattttggatgcaatcagagagc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6839162 |
gttcctccacctgagtgtgagcctgaacagcatgcaacagtagcatctgcgaccatagaacctactctaggcgctcagattttggatgcaatcagagagc |
6839261 |
T |
|
| Q |
521 |
tcagggctgattt |
533 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6839262 |
tcagggctgattt |
6839274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 533
Target Start/End: Original strand, 6754574 - 6755086
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| |||| | |||||||||||||| |||||||||||| |||||| |
|
|
| T |
6754574 |
ggattggcagaccataacgtcaaatctagaacctggtaacaatgtgcaggttatggtaattttggaggaaggtttcattgttgacaagactacgatatct |
6754673 |
T |
|
| Q |
121 |
ctattatatgatgaaccagacgacnnnnnnntgggacgctgtcatgtagtagatgaggaggatgttattgtttctggcaacgatgataataatgtctgtg |
220 |
Q |
| |
|
|| |||||||||||||||| | || ||| ||||||| |||||||||| | | ||||||||| ||||||||| | |||||| ||||||| ||| |
|
|
| T |
6754674 |
ctcttatatgatgaaccagtcaacaaaaaaatggaacgctgtgatgtagtagaggggcaggatgttactgtttctggatatgatgatgataatgttggtg |
6754773 |
T |
|
| Q |
221 |
tttccagtggtgatgatgaaaccatcaatcgttttggagaggaaactatgaatcacatccagattaccaagcacggcgatgggttatgtgttgatgtcgt |
320 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| |||||||||||||||||| ||||| |||||||||| |||||| |||||||||| ||||||| |||| |
|
|
| T |
6754774 |
tttctggtggtgataatgaagccatcaatccccatggagaggaaactatgaaccacatgcagattaccaggcacggtgatgggttatatgttgatatcgt |
6754873 |
T |
|
| Q |
321 |
gggaccgatacagctagtaccacatgaccttgaccagcctgtagaggcagtagctgaggagattcatccagctgaagaacaacctgatcaggagcaccat |
420 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
6754874 |
gggacggatacagccagtaccagatgaccttgagcagcctgcggaggcagtaactgaggagattcatgcagctgaagaacaacgtgatcaagagcacccg |
6754973 |
T |
|
| Q |
421 |
gttcctccacctgagtgtgagcctgaacagcatgcaacagtagcatctgcgaccatagaacctactctaggcgctcagattttggatgcaatcagagagc |
520 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||| ||||||| || |
|
|
| T |
6754974 |
gttcctccacctgagggtgagcctgagcagcatgcaacagtagcatctgcgaccgtagaacctactctaggagctcaaattctggatgccatcagagcgc |
6755073 |
T |
|
| Q |
521 |
tcagggctgattt |
533 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6755074 |
tcagggctgattt |
6755086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 533
Target Start/End: Complemental strand, 6587169 - 6586657
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||| | |||| || | ||||||||||||||||||||||||||| |||||||| || ||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
6587169 |
ggattggcagagcataacatctaatctagaacctggtaacaaagtggaggtaatggttgtatttggggagggtttcattgttgagaagactacaatatct |
6587070 |
T |
|
| Q |
121 |
ctattatatgatgaaccagacgacnnnnnnntgggacgctgtcatgtagtagatgaggaggatgttattgtttctggcaacgatgataataatgtctgtg |
220 |
Q |
| |
|
|| |||||||||||||||| | || ||| | | |||||||||||||| | ||| ||||||||||||||||| || || ||||||||||| ||| |
|
|
| T |
6587069 |
ctcttatatgatgaaccagtcaacaaagaaatggaatgttgtcatgtagtagacgtggatgatgttattgtttctggaaatgacgataataatgttggtg |
6586970 |
T |
|
| Q |
221 |
tttccagtggtgatgatgaaaccatcaatcgttttggagaggaaactatgaatcacatccagattaccaagcacggcgatgggttatgtgttgatgtcgt |
320 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||| |||||||||||||| ||| || | ||||| | | | || ||||||| | || ||||| || |
|
|
| T |
6586969 |
tttctagtggtgataatgaagtcattaatcagtttggagaggaaacgccgaaccatttgcagatcattagtcccgcagatgggtggtatgccgatgttgt |
6586870 |
T |
|
| Q |
321 |
gggaccgatacagctagtaccacatgaccttgaccagcctgtagaggcagtagctgaggagattcatccagctgaagaacaacctgatcaggagcaccat |
420 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||| || ||||||| |||||||||| ||||| ||||||||||| ||| |||||||||||| || |
|
|
| T |
6586869 |
gggaccggtactgctagtaccatatgaccttcaccagcttgcggaggcagaagctgaggagcttcatgcagctgaagaaaaacatgatcaggagcaacag |
6586770 |
T |
|
| Q |
421 |
gttcctccacctgagtgtgagcctgaacagcatgcaacagtagcatctgcgaccatagaacctactctaggcgctcagattttggatgcaatcagagagc |
520 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
6586769 |
gttcttccacttaagtgtgagcctgaacagcatgcaatagtagcgtcagcgaccatagaacctactctaggagctcagattttggatgctatcagagagc |
6586670 |
T |
|
| Q |
521 |
tcagggctgattt |
533 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6586669 |
tcagggctgattt |
6586657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 6797840 - 6798080
Alignment:
| Q |
22 |
gattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatctc |
121 |
Q |
| |
|
|||||||| ||| |||| |||| | ||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| |||||||| ||||| |
|
|
| T |
6797840 |
gattggcataccataacatcaaatgtagaacctggtaacaaagtggaggttatggttgtttttggggagggattcattgttgagaagactaccctatctt |
6797939 |
T |
|
| Q |
122 |
tattatatgatgaaccagacgacnnnnnnntgggacgctgtcatgtagtagatgaggaggatgttattgtttctggcaacgatgataataatgtctgtgt |
221 |
Q |
| |
|
|| | |||||||| |||| | || ||| ||| ||||| |||||||| |||||||||||||||||||||| ||| || |||| ||| || ||||| |
|
|
| T |
6797940 |
tactgtatgatgatccagtcaacaaagaaatggaacgttgtcaagtagtagacgaggaggatgttattgtttctgacaatgacgatattaaagtttgtgt |
6798039 |
T |
|
| Q |
222 |
ttccagtggtgatgatgaaaccatcaatcgttttggagagg |
262 |
Q |
| |
|
|||| |||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
6798040 |
ttccggtggtgataatgaatccatcaatcgctttggagagg |
6798080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 6729600 - 6729979
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| | | | |||||| ||| | | ||||||||| ||||| |
|
|
| T |
6729600 |
ggattggcagagcataacatcaaatctagaacctggtaacaaagtggaggttatggttgtttttgcgaagggtttctttgttaagaagactacattatct |
6729699 |
T |
|
| Q |
121 |
ctattatatgatgaaccagacgacnnnnnnntgggacgctgtcatgtagtagatgaggaggatgttattgtttctggcaacgatgataataatgtctgtg |
220 |
Q |
| |
|
|| |||||||||||||||| |||| || ||| ||| ||||||||| |||||||||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
6729700 |
ctcttatatgatgaaccagtcgacaaagaaatgcaacgttgttttgtagtagacgaggaggatgttattgtttctggcaatgacgataataatgttagtg |
6729799 |
T |
|
| Q |
221 |
tttccagtggtgatgatgaaaccatcaatcgttttgg---agaggaaactatgaatcacatccagattaccaagcacggcgatgggttatgtgttgatgt |
317 |
Q |
| |
|
|||| | |||||| ||||| || | | || ||||| || | ||| |||| | ||| ||||||||| | || |||||||| | || |||||| |
|
|
| T |
6729800 |
tttctggaggtgataatgaagccgtgcaccgctttggtaaagggttcactgtgaaccgcatgttgattaccaaacgcgctgatgggttgtatgctgatgt |
6729899 |
T |
|
| Q |
318 |
cgtgggaccgatacagctagtaccacatgaccttgaccagcctgtagaggcagtagctgaggagattcatccagctgaag |
397 |
Q |
| |
|
| |||||| | |||| ||| ||| |||||||| ||||| ||||| ||||| |||||| |||||||||||| |||| |||| |
|
|
| T |
6729900 |
catgggactggtacaactaatactacatgaccctgacctgcctgcagaggtagtagccgaggagattcatgcagccgaag |
6729979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 6759300 - 6759475
Alignment:
| Q |
22 |
gattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatctc |
121 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || | |||||||||| ||| |||||| || |||||| |
|
|
| T |
6759300 |
gattgggagagcgtaacgtcaaacctagaacctggtaacaaagtcgaggttatggttgtttttcggcagggtttcattgttgagaagactgcagtatctc |
6759399 |
T |
|
| Q |
122 |
tattatatgatgaaccagacgacnnnnnnntgggacgctgtcatgtagtagatgaggaggatgttattgtttctgg |
197 |
Q |
| |
|
| |||||||||| ||||| ||| ||| || || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6759400 |
tcttatatgatgcaccagtcgaacaagaaatggaacactttcatgtagtagatgaggaggttgttattgtttctgg |
6759475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 6761842 - 6761959
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||| | |||| |||| |||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| ||| ||||||||| ||||| |
|
|
| T |
6761842 |
ggattggcagagcataacatcaaatctagaacctggtaacaaagtgaagtttatggttgtttttggggagggtttcattgttgagaagactacagtatct |
6761941 |
T |
|
| Q |
121 |
ctattatatgatgaacca |
138 |
Q |
| |
|
|| || |||||| ||||| |
|
|
| T |
6761942 |
ctgttgtatgataaacca |
6761959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 6544288 - 6544172
Alignment:
| Q |
22 |
gattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatctc |
121 |
Q |
| |
|
|||||| ||| | |||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||| || ||||| |||||||||| |
|
|
| T |
6544288 |
gattggaagaacataacatcaaatctagaacctggtaacaaagtggaggttatgattgtttttggggagggattcattgtagagaagacaacaatatctc |
6544189 |
T |
|
| Q |
122 |
tattatatgatgaacca |
138 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
6544188 |
tcttatatgctgaacca |
6544172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 5596828 - 5596708
Alignment:
| Q |
18 |
tgtggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaata |
117 |
Q |
| |
|
||||||||||||| | |||| || | ||||||||||| |||||||||| | |||||||||||||| ||||| ||||||| || ||| |||||||||||| |
|
|
| T |
5596828 |
tgtggattggcagcgcataacatcgaatctagaacctgctaacaaagtgaatgttatggttgtttttggggagggtttcactgttgagaagactacaata |
5596729 |
T |
|
| Q |
118 |
tctctattatatgatgaacca |
138 |
Q |
| |
|
||||| || |||||| ||||| |
|
|
| T |
5596728 |
tctctcttgtatgataaacca |
5596708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 6676901 - 6677018
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
|||||||| || | |||| |||| ||| |||||||||||||| ||||||||||| ||||| || ||||| || ||||||| ||| ||||| ||| ||||| |
|
|
| T |
6676901 |
ggattggcggagcataacatcaaatcttgaacctggtaacaaggtggaggttattgttgtgtttggggatggattcattgttgagaagacaacattatct |
6677000 |
T |
|
| Q |
121 |
ctattatatgatgaacca |
138 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
6677001 |
cttttatatgatgaacca |
6677018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 6740587 - 6740707
Alignment:
| Q |
18 |
tgtggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaata |
117 |
Q |
| |
|
|||||||| ||||| |||| |||| |||||||||||||||||| ||| || ||||||||||||| ||||| || ||||||| ||| |||||||||| | |
|
|
| T |
6740587 |
tgtggatttgcagagtataacatcaaatctagaacctggtaacaaggtgaagattatggttgtttttggggagggattcattgttgagaagactacaaca |
6740686 |
T |
|
| Q |
118 |
tctctattatatgatgaacca |
138 |
Q |
| |
|
||||| || |||||| ||||| |
|
|
| T |
6740687 |
tctctcttgtatgataaacca |
6740707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 6816702 - 6816811
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||| | |||| |||| |||||||| ||||||||||||| || ||||||||||||| ||||| |||||| || ||| || |||||| ||||| |
|
|
| T |
6816702 |
ggattggcagagcataacatcaaatctagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttccatgttgagaatactacagtatct |
6816801 |
T |
|
| Q |
121 |
ctattatatg |
130 |
Q |
| |
|
|| ||||||| |
|
|
| T |
6816802 |
ctcttatatg |
6816811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 6497384 - 6497267
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||| ||| | |||| |||| ||||||| |||||||||||||||| |||||| ||||||| ||||| || ||||||| || ||||| | | ||||| |
|
|
| T |
6497384 |
ggattggaagagcataacatcaaatctagaatctggtaacaaagtggaagttatgattgtttttggggagggattcattgtagagaagacaaaattatct |
6497285 |
T |
|
| Q |
121 |
ctattatatgatgaacca |
138 |
Q |
| |
|
|| ||||||||| ||||| |
|
|
| T |
6497284 |
ctcttatatgatcaacca |
6497267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 6620364 - 6620261
Alignment:
| Q |
35 |
taacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatctctattatatgatga |
134 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||||||||| |||||| | ||| || |||| || || || || ||| ||||||| ||||||||||| |
|
|
| T |
6620364 |
taacatcaagtctagaacctggtaacacagtggaggttatggctgtttttgcggagggattcaatgtagaaaaaacaacagtatctctcttatatgatga |
6620265 |
T |
|
| Q |
135 |
acca |
138 |
Q |
| |
|
|||| |
|
|
| T |
6620264 |
acca |
6620261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 6531249 - 6531135
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||| | ||| |||| ||||||||||||||| ||||||||||| || ||||||| || || || ||||||| || ||||| ||||||| | |
|
|
| T |
6531249 |
ggattggcagaacataaaatcaaatctagaacctggtaatgaagtggaggttgtgcttgtttttggagagggattcattgtggagaagacaacaatatat |
6531150 |
T |
|
| Q |
121 |
ctattatatgatgaa |
135 |
Q |
| |
|
|| ||||||| |||| |
|
|
| T |
6531149 |
ctcttatatgttgaa |
6531135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 6652389 - 6652451
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgtttt |
83 |
Q |
| |
|
||||||||||| | |||| |||| |||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
6652389 |
ggattggcagagcataacatcaaatctagagcctagtaacaaagtagaggttatggttgtttt |
6652451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 6816959 - 6817008
Alignment:
| Q |
332 |
agctagtaccacatgaccttgaccagcctgtagaggcagtagctgaggag |
381 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
6816959 |
agctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggag |
6817008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 17203 - 17105
Alignment:
| Q |
40 |
tcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatctctattatatgatgaacca |
138 |
Q |
| |
|
|||| |||||||||||||||||| ||| || ||||||||||||| ||||| || ||||||| ||| |||||||||| |||||| || |||||| ||||| |
|
|
| T |
17203 |
tcaaatctagaacctggtaacaaggtgaagattatggttgtttttggggagggattcattgttgagaagactacaacatctctcttgtatgataaacca |
17105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 7131 - 7022
Alignment:
| Q |
21 |
ggattggcagaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatct |
120 |
Q |
| |
|
||||||||||| | |||| |||| |||||||| ||||||||||||| || ||||||||||||| ||||| |||||| || ||| || |||||| ||||| |
|
|
| T |
7131 |
ggattggcagagcataacatcaaatctagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttccatgttgagaatactacagtatct |
7032 |
T |
|
| Q |
121 |
ctattatatg |
130 |
Q |
| |
|
|| ||||||| |
|
|
| T |
7031 |
ctcttatatg |
7022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 6874 - 6825
Alignment:
| Q |
332 |
agctagtaccacatgaccttgaccagcctgtagaggcagtagctgaggag |
381 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
6874 |
agctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggag |
6825 |
T |
|
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Target: scaffold0286 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 8006 - 8109
Alignment:
| Q |
35 |
taacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaatatctctattatatgatga |
134 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||||||||| |||||| | ||| || |||| || || || || ||| ||||||| ||||||||||| |
|
|
| T |
8006 |
taacatcaagtctagaacctggtaacacagtggaggttatggctgtttttgcggagggattcaatgtagaaaaaacaacagtatctctcttatatgatga |
8105 |
T |
|
| Q |
135 |
acca |
138 |
Q |
| |
|
|||| |
|
|
| T |
8106 |
acca |
8109 |
T |
|
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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 7962 - 7908
Alignment:
| Q |
47 |
tagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgc |
101 |
Q |
| |
|
||||||| || ||||||||||||||| | |||||||| ||||| ||||||||||| |
|
|
| T |
7962 |
tagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgc |
7908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 5098421 - 5098457
Alignment:
| Q |
47 |
tagaacctggtaacaaagtggaggttatggttgtttt |
83 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5098421 |
tagaacctggtaacaaagtggaggtcattgttgtttt |
5098457 |
T |
|
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