View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_37 (Length: 549)

Name: NF8971_low_37
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_37
NF8971_low_37
[»] chr6 (8 HSPs)
chr6 (293-531)||(27175733-27175971)
chr6 (1-196)||(27176071-27176266)
chr6 (488-529)||(607775-607816)
chr6 (281-310)||(736861-736890)
chr6 (274-311)||(27334858-27334895)
chr6 (274-311)||(27395598-27395635)
chr6 (274-311)||(32644623-32644660)
chr6 (128-196)||(30622138-30622206)
[»] chr8 (9 HSPs)
chr8 (128-193)||(11789888-11789953)
chr8 (274-311)||(14531621-14531658)
chr8 (281-311)||(29913564-29913594)
chr8 (274-311)||(9985712-9985749)
chr8 (274-307)||(33511747-33511780)
chr8 (274-311)||(34037520-34037557)
chr8 (274-311)||(36497661-36497698)
chr8 (274-311)||(40380281-40380318)
chr8 (281-313)||(20852917-20852949)
[»] chr3 (11 HSPs)
chr3 (274-322)||(19418191-19418239)
chr3 (128-189)||(22153985-22154046)
chr3 (128-200)||(35425561-35425633)
chr3 (281-311)||(21239119-21239149)
chr3 (281-311)||(37134647-37134677)
chr3 (274-311)||(1295332-1295369)
chr3 (274-311)||(7867745-7867782)
chr3 (274-311)||(36799398-36799435)
chr3 (274-311)||(45528976-45529013)
chr3 (274-311)||(50559246-50559283)
chr3 (274-311)||(50652388-50652425)
[»] chr7 (16 HSPs)
chr7 (274-311)||(26153646-26153683)
chr7 (128-196)||(49089053-49089121)
chr7 (498-532)||(48675778-48675812)
chr7 (274-311)||(2323304-2323341)
chr7 (274-311)||(5068657-5068694)
chr7 (281-310)||(10014996-10015025)
chr7 (274-311)||(22692084-22692121)
chr7 (274-311)||(31785494-31785531)
chr7 (274-311)||(40693562-40693599)
chr7 (128-196)||(17500811-17500879)
chr7 (128-196)||(17552335-17552403)
chr7 (274-310)||(30818031-30818067)
chr7 (276-312)||(37832449-37832485)
chr7 (274-310)||(38547313-38547349)
chr7 (274-310)||(43171207-43171243)
chr7 (274-310)||(49025337-49025373)
[»] chr4 (15 HSPs)
chr4 (274-314)||(52430874-52430914)
chr4 (269-311)||(35017153-35017195)
chr4 (274-311)||(3475869-3475906)
chr4 (274-311)||(11012141-11012178)
chr4 (274-311)||(15515795-15515832)
chr4 (274-311)||(24088598-24088635)
chr4 (281-310)||(32464645-32464674)
chr4 (274-311)||(33093138-33093175)
chr4 (274-311)||(36444429-36444466)
chr4 (274-311)||(42853939-42853976)
chr4 (274-311)||(44272844-44272881)
chr4 (274-311)||(44626605-44626642)
chr4 (274-311)||(45764422-45764459)
chr4 (274-311)||(47014939-47014976)
chr4 (125-189)||(17363351-17363415)
[»] chr1 (16 HSPs)
chr1 (274-314)||(29293956-29293996)
chr1 (128-196)||(30530288-30530356)
chr1 (269-311)||(18610773-18610815)
chr1 (274-311)||(11947795-11947832)
chr1 (285-314)||(23472105-23472134)
chr1 (274-311)||(26585207-26585244)
chr1 (274-311)||(29706737-29706774)
chr1 (274-311)||(31184281-31184318)
chr1 (127-196)||(34002208-34002277)
chr1 (274-315)||(34395953-34395994)
chr1 (274-311)||(40139126-40139163)
chr1 (273-322)||(42256449-42256498)
chr1 (274-311)||(43612103-43612140)
chr1 (274-311)||(52261339-52261376)
chr1 (283-311)||(1689391-1689419)
chr1 (274-314)||(29264012-29264052)
[»] scaffold0154 (2 HSPs)
scaffold0154 (274-312)||(19725-19763)
scaffold0154 (274-311)||(4315-4352)
[»] chr5 (9 HSPs)
chr5 (489-531)||(16924915-16924957)
chr5 (274-307)||(3154677-3154710)
chr5 (274-311)||(7144577-7144614)
chr5 (274-311)||(19844343-19844380)
chr5 (274-311)||(29803225-29803262)
chr5 (274-311)||(34428160-34428197)
chr5 (490-531)||(40383706-40383747)
chr5 (128-196)||(3155116-3155184)
chr5 (285-321)||(14070660-14070696)
[»] chr2 (16 HSPs)
chr2 (489-531)||(40138741-40138783)
chr2 (274-311)||(3091741-3091778)
chr2 (274-311)||(3299139-3299176)
chr2 (274-311)||(14255302-14255339)
chr2 (274-311)||(14891112-14891149)
chr2 (274-311)||(15141473-15141510)
chr2 (274-311)||(22303203-22303240)
chr2 (274-311)||(25086335-25086372)
chr2 (482-531)||(30956539-30956587)
chr2 (274-307)||(43621982-43622015)
chr2 (274-318)||(1040444-1040488)
chr2 (128-196)||(2308213-2308281)
chr2 (283-311)||(4319769-4319797)
chr2 (274-310)||(8087372-8087408)
chr2 (274-310)||(15505176-15505212)
chr2 (276-308)||(36175746-36175778)
[»] scaffold0662 (1 HSPs)
scaffold0662 (274-311)||(1078-1115)
[»] scaffold0002 (1 HSPs)
scaffold0002 (274-311)||(440718-440755)
[»] scaffold0041 (1 HSPs)
scaffold0041 (272-308)||(34411-34447)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 293 - 531
Target Start/End: Complemental strand, 27175971 - 27175733
Alignment:
Q  293 tgtacaaatatcatttctcctttcttatcaagtac-cttatatgacatgtcaggattgtttgcttgaaatcaaacatactcgttttacaatatgaattta 391  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  27175971 tgtacaaatatcatttctcctttcttatcaagtactcttacatcacatgtcaggattgtttgcttgaaatcaaacat----gttttacaatatgaattta 27175876  T
Q  392 gagaataaagaatatggaaactcaacattttgtgaatagtaaaattgaacggaagaagtgagcg-cacaa--tatattgatccacattgtgtgtatatag 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||||||||||    
T  27175875 gagaataaagaatatggaaactcaacattttgtgaatagtaaaattgaacggaagaagtgagtgttacaatgtgtattgatccacattgtgtgtatatag 27175776  T
Q  489 tttgctaacttaaaccaacctaaaaacatgaaggtctaagtta 531  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  27175775 tttgctaatttaaaccaacctaaaatcatgaaggtttaagtta 27175733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27176266 - 27176071
Alignment:
Q  1 cgatctaataatgttaatattatcggttgtgttacacctttgcggataaatatttattcaactttatagaggttagaaaattgtgttttcaaattcaata 100  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27176266 cgatctaataatgttgatattgtcggttgtgtaacacctttgcggataaatatttattcaactttatagaggttagaaaattgttttttcaaattcaata 27176167  T
Q  101 aaaaatttatatttttgtctttcttatgagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||    
T  27176166 aaaaatttaaatttttgtctttcttgtgagtagtgatatttgtaaaataatttgtgacatctttaatgacaactttcatttgctttcttcttattg 27176071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 529
Target Start/End: Complemental strand, 607816 - 607775
Alignment:
Q  488 gtttgctaacttaaaccaacctaaaaacatgaaggtctaagt 529  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  607816 gtttgctaacttagatcaacctaaaaatatgaaggtctaagt 607775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 736861 - 736890
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttct 310  Q
    ||||||||||||||||||||||||||||||    
T  736861 tcataaaatagttgtacaaatatcatttct 736890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 27334895 - 27334858
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  27334895 aaagttgtcacaaaatagttgtacaaatatcatttctc 27334858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 27395635 - 27395598
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  27395635 aaagttgtcacaaaatagttgtacaaatatcatttctc 27395598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 32644660 - 32644623
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 30622206 - 30622138
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| |||| |||| ||| ||||| |||| |||| ||||||||||||||||   ||||||||||||    
T  30622206 gagtagtgatatatgtacaactatttgggacaactttgatgacaactttcattttttctcttcttattg 30622138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 11789953 - 11789888
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttctta 193  Q
    ||||||| ||||||||| ||| |||||||| |||||| |||||||||||||||||  |||||||||    
T  11789953 gagtagtgatatttgtacaactatttgtgatatctttgatgacaactttcatttgttctcttctta 11789888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 14531658 - 14531621
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| |||||||||||||||||||||||||||||||    
T  14531658 aaagttatcataaaatagttgtacaaatatcatttctc 14531621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 311
Target Start/End: Complemental strand, 29913594 - 29913564
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttctc 311  Q
    |||||||||||||||||||||||||||||||    
T  29913594 tcataaaatagttgtacaaatatcatttctc 29913564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 9985712 - 9985749
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  9985712 aaagttgtcataaaatagatgtacaaatatcatttctc 9985749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 33511747 - 33511780
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatt 307  Q
    |||||||||| |||||||||||||||||||||||    
T  33511747 aaagttttcacaaaatagttgtacaaatatcatt 33511780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 34037520 - 34037557
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  34037520 aaagttatcataaaatagttgtacaaatatcatctctc 34037557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 36497698 - 36497661
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  36497698 aaagttgtcacaaaatagttgtacaaatatcatttctc 36497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 40380318 - 40380281
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  40380318 aaagttgtcataaaatagatgtacaaatatcatttctc 40380281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 20852949 - 20852917
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttctcct 313  Q
    ||||||||| |||||||||||||||||||||||    
T  20852949 tcataaaatggttgtacaaatatcatttctcct 20852917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 19418191 - 19418239
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctcctttcttatca 322  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  19418191 aaagttgtcataaaatggttgtacaaatatcatttctcatttcttatca 19418239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 22154046 - 22153985
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactctt 189  Q
    ||||||| ||||||||| ||| |||||  ||| ||||||||||||||||||||||| |||||    
T  22154046 gagtagtgatatttgtacaaccatttggtacaactttaatgacaactttcatttgctctctt 22153985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 35425561 - 35425633
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattgatcc 200  Q
    ||||||| |||| |||| ||  |||||  |||||||| |||||||||||||||||| ||||||| ||||||||    
T  35425561 gagtagtgatatatgtataatcatttggtacatctttgatgacaactttcatttgctctcttctcattgatcc 35425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 21239119 - 21239149
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttctc 311  Q
    |||||||||||||||||||||||||||||||    
T  21239119 tcataaaatagttgtacaaatatcatttctc 21239149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 37134647 - 37134677
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttctc 311  Q
    |||||||||||||||||||||||||||||||    
T  37134647 tcataaaatagttgtacaaatatcatttctc 37134677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 1295369 - 1295332
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  1295369 aaagttatcacaaaatagttgtacaaatatcatttctc 1295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 7867745 - 7867782
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  7867745 aaagttgtcacaaaatagttgtacaaatatcatttctc 7867782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 36799435 - 36799398
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  36799435 aaagttatcaaaaaatagttgtacaaatatcatttctc 36799398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 45528976 - 45529013
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  45528976 aaagttgtcaaaaaatagttgtacaaatatcatttctc 45529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 50559246 - 50559283
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  50559246 aaagttgtcaaaaaatagttgtacaaatatcatttctc 50559283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 50652425 - 50652388
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  50652425 aaagttgtcataaaatggttgtacaaatatcatttctc 50652388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 26153683 - 26153646
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| |||||||||||||||||||||||||||||||    
T  26153683 aaagttgtcataaaatagttgtacaaatatcatttctc 26153646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 49089053 - 49089121
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| |||| |||| |||||||| ||||| |||| |||||||||||||||| | ||||||| ||||    
T  49089053 gagtagtgatatatgtacaacaatttctgacaactttgatgacaactttcattttctctcttctcattg 49089121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 532
Target Start/End: Complemental strand, 48675812 - 48675778
Alignment:
Q  498 ttaaaccaacctaaaaacatgaaggtctaagttaa 532  Q
    |||||||||| ||||||||||||||||||||||||    
T  48675812 ttaaaccaacataaaaacatgaaggtctaagttaa 48675778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 2323341 - 2323304
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  2323341 aaagttgtcataaaattgttgtacaaatatcatttctc 2323304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 5068657 - 5068694
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  5068657 aaagttatcataaaatggttgtacaaatatcatttctc 5068694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 10014996 - 10015025
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttct 310  Q
    ||||||||||||||||||||||||||||||    
T  10014996 tcataaaatagttgtacaaatatcatttct 10015025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 22692121 - 22692084
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  22692121 aaagttgtcataaaatggttgtacaaatatcatttctc 22692084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 31785494 - 31785531
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||||||||||| | |||||||||||||||||||||    
T  31785494 aaagttttcataaagtggttgtacaaatatcatttctc 31785531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 40693562 - 40693599
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40693562 aaagttgtcaaaaaatagttgtacaaatatcatttctc 40693599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 17500879 - 17500811
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| |||| |||| ||| ||||| |||| |||| |||| ||||||||||| | ||||||||||||    
T  17500879 gagtagtgatatatgtacaaccatttgggacaactttgatgataactttcattttctctcttcttattg 17500811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 17552335 - 17552403
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| |||| |||| ||| ||||| |||| |||| |||| ||||||||||| | ||||||||||||    
T  17552335 gagtagtgatatatgtacaaccatttgggacaactttgatgataactttcattttctctcttcttattg 17552403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 30818031 - 30818067
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttct 310  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  30818031 aaagttgtcataaaatggttgtacaaatatcatttct 30818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 37832485 - 37832449
Alignment:
Q  276 agttttcataaaatagttgtacaaatatcatttctcc 312  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  37832485 agttgtcacaaaatagttgtacaaatatcatttctcc 37832449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 38547313 - 38547349
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttct 310  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 43171207 - 43171243
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttct 310  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  43171207 aaagttgtcataaaatggttgtacaaatatcatttct 43171243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 49025337 - 49025373
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttct 310  Q
    |||||| |||||||||| |||||||||||||||||||    
T  49025337 aaagttgtcataaaataattgtacaaatatcatttct 49025373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 52430914 - 52430874
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctcctt 314  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  52430914 aaagttgtcataaaatagttgtacaaatatcatttttcctt 52430874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 35017195 - 35017153
Alignment:
Q  269 gtaacaaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||| |||||| ||| |||||||||||||||||||||||||||    
T  35017195 gtaaaaaagttgtcacaaaatagttgtacaaatatcatttctc 35017153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 3475906 - 3475869
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3475906 aaagttgtcataaaatggttgtacaaatatcatttctc 3475869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 11012178 - 11012141
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  11012178 aaagttgtcataaaatggttgtacaaatatcatttctc 11012141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 15515832 - 15515795
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  15515832 aaagttgtcataaaatagttgtaccaatatcatttctc 15515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 24088598 - 24088635
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  24088598 aaagttgtcataaaatggttgtacaaatatcatttctc 24088635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 32464645 - 32464674
Alignment:
Q  281 tcataaaatagttgtacaaatatcatttct 310  Q
    ||||||||||||||||||||||||||||||    
T  32464645 tcataaaatagttgtacaaatatcatttct 32464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 33093138 - 33093175
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  33093138 aaagttgtcacaaaatagttgtacaaatatcatttctc 33093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 36444429 - 36444466
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  36444429 aaagttatcataaaatggttgtacaaatatcatttctc 36444466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 42853976 - 42853939
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  42853976 aaagttgtcaaaaaatagttgtacaaatatcatttctc 42853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 44272844 - 44272881
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  44272844 aaagttgtcaaaaaatagttgtacaaatatcatttctc 44272881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 44626642 - 44626605
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  44626642 aaagttatcataaaatagttgttcaaatatcatttctc 44626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 45764422 - 45764459
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  45764422 aaagttgtcataaaatagttgtataaatatcatttctc 45764459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 47014976 - 47014939
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  47014976 aaagttgtcacaaaatagttgtacaaatatcatttctc 47014939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 17363415 - 17363351
Alignment:
Q  125 tatgagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactctt 189  Q
    ||||| |||| ||||||||||||| ||||   ||| |||| |||||||||||||||||| |||||    
T  17363415 tatgaatagtgatatttgtaaaaccattttatacaactttgatgacaactttcatttgctctctt 17363351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 29293996 - 29293956
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctcctt 314  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  29293996 aaagttgtcataaagtagttgtacaaatatcatttctcctt 29293956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 30530288 - 30530356
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| |||| |||| ||| ||||| |||| |||| |||||||||||||||| | ||||||||||||    
T  30530288 gagtagtgatatatgtacaaccatttgggacaactttgatgacaactttcattttctctcttcttattg 30530356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 18610815 - 18610773
Alignment:
Q  269 gtaacaaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||| |||||| ||| |||||||||||||||||||||||||||    
T  18610815 gtaaaaaagttgtcacaaaatagttgtacaaatatcatttctc 18610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 11947832 - 11947795
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  11947832 aaagttgtcataaaatggttgtacaaatatcatttctc 11947795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 23472134 - 23472105
Alignment:
Q  285 aaaatagttgtacaaatatcatttctcctt 314  Q
    ||||||||||||||||||||||||||||||    
T  23472134 aaaatagttgtacaaatatcatttctcctt 23472105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 26585207 - 26585244
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  26585207 aaagttatcacaaaatagttgtacaaatatcatttctc 26585244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 29706737 - 29706774
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  29706737 aaagttatcataaaatggttgtacaaatatcatttctc 29706774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 31184318 - 31184281
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  31184318 aaagttgtcataaaatggttgtacaaatatcatttctc 31184281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 34002208 - 34002277
Alignment:
Q  127 tgagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    |||||||| |||| |||| ||| ||||| |||| |||| || ||||||||||||| | ||||||||||||    
T  34002208 tgagtagtgatatatgtacaactatttgggacaactttgatcacaactttcattttctctcttcttattg 34002277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 34395953 - 34395994
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctccttt 315  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  34395953 aaagttgtcataaaatagatgtacaaatatcatttatccttt 34395994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 40139163 - 40139126
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  40139163 aaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 42256498 - 42256449
Alignment:
Q  273 caaagttttcataaaatagttgtacaaatatcatttctcctttcttatca 322  Q
    ||||||| ||| ||||| ||||||||||||||||||||| ||| ||||||    
T  42256498 caaagttgtcacaaaatggttgtacaaatatcatttctcttttattatca 42256449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 43612103 - 43612140
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  43612103 aaagttgtcataaaatggttgtacaaatatcatttctc 43612140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 52261376 - 52261339
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  52261376 aaagttatcataaaatagttgttcaaatatcatttctc 52261339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 1689419 - 1689391
Alignment:
Q  283 ataaaatagttgtacaaatatcatttctc 311  Q
    |||||||||||||||||||||||||||||    
T  1689419 ataaaatagttgtacaaatatcatttctc 1689391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 29264052 - 29264012
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctcctt 314  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  29264052 aaagttgtcataaagtggttgtacaaatatcatttctcctt 29264012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 19725 - 19763
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctcc 312  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  19725 aaagttgtcacaaaatagttgtacaaatatcatttctcc 19763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 4352 - 4315
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  4352 aaagttatcataaaatggttgtacaaatatcatttctc 4315  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Complemental strand, 16924957 - 16924915
Alignment:
Q  489 tttgctaacttaaaccaacctaaaaacatgaaggtctaagtta 531  Q
    |||| ||||||| |||||||||||||||| |||||||||||||    
T  16924957 tttgttaacttagaccaacctaaaaacataaaggtctaagtta 16924915  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 3154677 - 3154710
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatt 307  Q
    |||||| |||||||||||||||||||||||||||    
T  3154677 aaagttatcataaaatagttgtacaaatatcatt 3154710  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 7144614 - 7144577
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  7144614 aaagttatcataaaatggttgtacaaatatcatttctc 7144577  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 19844343 - 19844380
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  19844343 aaagttatcaaaaaatagttgtacaaatatcatttctc 19844380  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 29803262 - 29803225
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29803262 aaagttgtcaaaaaatagttgtacaaatatcatttctc 29803225  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 34428197 - 34428160
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  34428197 aaagttgtcaaaaaatagttgtacaaatatcatttctc 34428160  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 40383706 - 40383747
Alignment:
Q  490 ttgctaacttaaaccaacctaaaaacatgaaggtctaagtta 531  Q
    ||||||||||| |||||||||||||||| |||| ||||||||    
T  40383706 ttgctaacttagaccaacctaaaaacattaaggactaagtta 40383747  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 3155184 - 3155116
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| ||||||||| ||  || | ||||| ||||||||||||||||||||| | || |||||||||    
T  3155184 gagtagtgatatttgtacaatcatatatgacaactttaatgacaactttcattttctctattcttattg 3155116  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 14070660 - 14070696
Alignment:
Q  285 aaaatagttgtacaaatatcatttctcctttcttatc 321  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  14070660 aaaatagttgtacaaatatcatttctcatttattatc 14070696  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 40138741 - 40138783
Alignment:
Q  489 tttgctaacttaaaccaacctaaaaacatgaaggtctaagtta 531  Q
    |||||||||||| | ||||||||||| ||||||||||||||||    
T  40138741 tttgctaacttagaacaacctaaaaatatgaaggtctaagtta 40138783  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 3091778 - 3091741
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  3091778 aaagttatcacaaaatagttgtacaaatatcatttctc 3091741  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 3299139 - 3299176
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3299139 aaagttgtcataaaatggttgtacaaatatcatttctc 3299176  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 14255339 - 14255302
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  14255339 aaagttgtcataaaatagttgtacaaatattatttctc 14255302  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 14891112 - 14891149
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  14891112 aaagttatcacaaaatagttgtacaaatatcatttctc 14891149  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 15141510 - 15141473
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcatttctc 15141473  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 22303240 - 22303203
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  22303240 aaagttgtcaaaaaatagttgtacaaatatcatttctc 22303203  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 25086372 - 25086335
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  25086372 aaagttgtcataaaattgttgtacaaatatcatttctc 25086335  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 30956539 - 30956587
Alignment:
Q  482 tatatagtttgctaacttaaaccaacctaaaaacatgaaggtctaagtta 531  Q
    ||||||||||||||||||| ||||| | ||||||||||||||| ||||||    
T  30956539 tatatagtttgctaacttagaccaa-caaaaaacatgaaggtccaagtta 30956587  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 43621982 - 43622015
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatt 307  Q
    |||||| |||||||||||||||||||||||||||    
T  43621982 aaagttgtcataaaatagttgtacaaatatcatt 43622015  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 1040444 - 1040488
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctcctttctt 318  Q
    |||||| ||||||||||||||| | ||||||||||||| ||||||    
T  1040444 aaagttgtcataaaatagttgttcgaatatcatttctcttttctt 1040488  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 2308213 - 2308281
Alignment:
Q  128 gagtagtcatatttgtaaaacaatttgtgacatctttaatgacaactttcatttgcactcttcttattg 196  Q
    ||||||| ||||||||| ||| || | ||||| |||| |||||||||||||||| | ||||||| ||||    
T  2308213 gagtagtgatatttgtacaaccatatatgacaactttgatgacaactttcattttctctcttctcattg 2308281  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 4319797 - 4319769
Alignment:
Q  283 ataaaatagttgtacaaatatcatttctc 311  Q
    |||||||||||||||||||||||||||||    
T  4319797 ataaaatagttgtacaaatatcatttctc 4319769  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 8087408 - 8087372
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttct 310  Q
    |||||| |||||||||| |||||||||||||||||||    
T  8087408 aaagttgtcataaaataattgtacaaatatcatttct 8087372  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 15505212 - 15505176
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttct 310  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  15505212 aaagttatcataaaatagttgttcaaatatcatttct 15505176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 36175778 - 36175746
Alignment:
Q  276 agttttcataaaatagttgtacaaatatcattt 308  Q
    |||| ||||||||||||||||||||||||||||    
T  36175778 agttgtcataaaatagttgtacaaatatcattt 36175746  T

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Target: scaffold0662 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 1115 - 1078
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  1115 aaagttgtcacaaaatagttgtacaaatatcatttctc 1078  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 440755 - 440718
Alignment:
Q  274 aaagttttcataaaatagttgtacaaatatcatttctc 311  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  440755 aaagttgtcataaagtagttgtacaaatatcatttctc 440718  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 34447 - 34411
Alignment:
Q  272 acaaagttttcataaaatagttgtacaaatatcattt 308  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  34447 acaaagttgtcaaaaaatagttgtacaaatatcattt 34411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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