View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_40 (Length: 533)
Name: NF8971_low_40
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 68 - 517
Target Start/End: Original strand, 41125904 - 41126349
Alignment:
| Q |
68 |
tctcatttgtgtcatgtttcacttgcacacatatatatctcctcatcctttttgttttgatatcaccgccaacactttccaacatattccagaaaccaga |
167 |
Q |
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| T |
41125904 |
tctcatttgtttcatgtttcacttgcacacatat----ctcctcatcctttttgttttgatatcaccgccaacactttccaacatattccagaaaccaga |
41125999 |
T |
|
| Q |
168 |
atggagatatggttcatcgtcttagtttctgtatgtgtgtgttggttgatcaaagccaccctctccatcactgctaagagtgtaagcctccctcctggcc |
267 |
Q |
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| T |
41126000 |
atggagacatggttcatcgtcttattttctgtatgtgtgtgttggttgatcaaagccaccctctccatcactactaagagtgtaagcctccctcctggcc |
41126099 |
T |
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| Q |
268 |
ctccacacatacctatcatcacacccctcttatggcttagaaaatcattcgcccaaacccaacttgtaccctttcttcgaaccctacatgcaaaacatgg |
367 |
Q |
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| T |
41126100 |
ctccacacatacctatcatcacacccctcttatggcttagaaaatcattcacccaaacccaacttgtaccctttcttcgaaccctacatgcaaaacatgg |
41126199 |
T |
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| Q |
368 |
tccaataattagtcttcaaatcattttccgtcgaatcgtattcatttctgatcgatcccttgcccaccatgccctaatccaaaattcatctgttttctct |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126200 |
tccaataattagtcttcaaatcattttccgtcgaatcgtattcatttctgatcgatcccttgcccaccatgccctaatccaaaattcatctgttttctct |
41126299 |
T |
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| Q |
468 |
gaccgccctataccacttcctaatatcaacctcatttcaagtaatcaaca |
517 |
Q |
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| T |
41126300 |
gaccgccctataccacttcctaatatcaacctcatttcaagtaatcaaca |
41126349 |
T |
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