View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_41 (Length: 528)

Name: NF8971_low_41
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_41
NF8971_low_41
[»] chr6 (5 HSPs)
chr6 (16-442)||(33757432-33757854)
chr6 (473-517)||(33757357-33757401)
chr6 (114-150)||(9749905-9749941)
chr6 (16-86)||(12153180-12153249)
chr6 (112-140)||(17328693-17328721)
[»] chr5 (7 HSPs)
chr5 (19-87)||(25618274-25618342)
chr5 (27-149)||(6462346-6462467)
chr5 (19-87)||(25617612-25617680)
chr5 (110-149)||(32882800-32882839)
chr5 (27-89)||(34640007-34640069)
chr5 (112-149)||(1621515-1621552)
chr5 (16-92)||(16869953-16870029)
[»] chr3 (6 HSPs)
chr3 (16-149)||(13799987-13800119)
chr3 (110-149)||(32582526-32582565)
chr3 (112-150)||(54138476-54138514)
chr3 (69-146)||(1384224-1384300)
chr3 (104-149)||(43822601-43822646)
chr3 (16-92)||(37083840-37083916)
[»] scaffold0040 (2 HSPs)
scaffold0040 (16-92)||(49907-49983)
scaffold0040 (110-149)||(49865-49904)
[»] chr4 (3 HSPs)
chr4 (16-80)||(23051683-23051747)
chr4 (100-149)||(20435495-20435544)
chr4 (24-80)||(5291512-5291568)
[»] chr1 (5 HSPs)
chr1 (21-141)||(20791924-20792043)
chr1 (18-92)||(5951852-5951926)
chr1 (200-260)||(31117521-31117581)
chr1 (100-141)||(7583503-7583544)
chr1 (112-149)||(31117694-31117731)
[»] chr2 (6 HSPs)
chr2 (49-149)||(44809816-44809914)
chr2 (100-149)||(27863791-27863840)
chr2 (228-284)||(27679304-27679360)
chr2 (222-262)||(27679398-27679438)
chr2 (113-149)||(41090597-41090633)
chr2 (16-92)||(42139378-42139453)
[»] chr8 (4 HSPs)
chr8 (18-92)||(27316672-27316746)
chr8 (28-93)||(13544114-13544179)
chr8 (28-93)||(13680294-13680359)
chr8 (27-87)||(13895970-13896030)
[»] chr7 (3 HSPs)
chr7 (111-140)||(3837017-3837046)
chr7 (219-264)||(12137381-12137426)
chr7 (22-147)||(30046310-30046433)


Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 33757854 - 33757432
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaaagttaaataacttgtaactttt 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33757854 tttctcacgaacttatagcttatttttatgaatttatagcagtttatgacaagttaattcaagtaatttatagcttaaagtttaataacttgtaactttt 33757755  T
Q  116 tatctcaattttacccctgcaatcttgattgaaatcaactaaatgcacatctttttatgtcatttcatattaatacactacttaaactataaacttgctt 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33757754 tatctcaattttacccctacaatcttgattgaaatcaactaaatgcacatctttttatgtcatttcatattaatacactacttaaactataaactagctt 33757655  T
Q  216 acaagttatcaactataagttcatctgatataagctaacttatcaatcataggttattttttaccaaactgagcctaaggcatccgctataagcaaagct 315  Q
    |||||| ||||||||||||||||| | |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  33757654 acaagtcatcaactataagttcatttaatataagctaacttatcagtcatcgattattttttaccaaactgagcctaaggcatccgctataagcaaagct 33757555  T
Q  316 cgtaaaaataaactataagttgaggtaaaatgacccatatcaaaaaggtactttttcataagctataagctcnnnnnnnncagttcttttttaccacaga 415  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||  ||||    
T  33757554 cgtaaaaataaactataagctgaggtaaaatgacccatatcaaaaaggtactttttcataagctataagctc--aaaaaacagttcttttttac--caga 33757459  T
Q  416 gtcttaatactgagtgtttgaccagag 442  Q
    ||||||| |||||||||||||||||||    
T  33757458 gtcttaacactgagtgtttgaccagag 33757432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 473 - 517
Target Start/End: Complemental strand, 33757401 - 33757357
Alignment:
Q  473 gaagagtttaaaagtagttaccctccagcataacttaacaccaaa 517  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  33757401 gaagagtttaaaagtagttaccctccagcataacttaacatcaaa 33757357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 9749941 - 9749905
Alignment:
Q  114 tttatctcaattttacccctgcaatcttgattgaaat 150  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9749941 tttatctcaattttacccctgcaatcttaattgaaat 9749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 12153249 - 12153180
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttat 86  Q
    ||||||| || | ||||||||||||| |||||||||||| ||||| |||| ||| ||||||||||| ||||    
T  12153249 tttctcatgagcgtatagcttatttt-atgagtttatagtagtttttgacgagtcaattcaagtaagttat 12153180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 17328721 - 17328693
Alignment:
Q  112 tttttatctcaattttacccctgcaatct 140  Q
    |||||||||||||||||||||||||||||    
T  17328721 tttttatctcaattttacccctgcaatct 17328693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25618274 - 25618342
Alignment:
Q  19 ctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttata 87  Q
    ||||| || ||||||||||||||||| |||||| |||||||| |||  |||||||||||||||||||||    
T  25618274 ctcacaaatttatagcttatttttattagtttagagcagtttttgaaaagttaattcaagtaatttata 25618342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 6462467 - 6462346
Alignment:
Q  27 cttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaaagttaaataacttgtaactttttatctcaattt 126  Q
    |||||||||||||||||  || ||||||  |||| |||  || |||||||||||  ||||| ||||||| | | || ||| | | | |||||||||||||    
T  6462467 cttatagcttatttttactagcttatagtggtttttgataagctaattcaagtagcttatatcttaaagctta-tagcttatcattatttatctcaattt 6462369  T
Q  127 tacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||||||    
T  6462368 tacccctgcaatcttgattgaaa 6462346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25617612 - 25617680
Alignment:
Q  19 ctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttata 87  Q
    ||||| || ||||||||||||||||| |||||| |||||||| |||  ||||||||||| |||||||||    
T  25617612 ctcacaaatttatagcttatttttattagtttagagcagtttttgaaaagttaattcaaataatttata 25617680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 32882800 - 32882839
Alignment:
Q  110 actttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  32882800 actttttatctcaattttacccctgcaatcttaattgaaa 32882839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 34640007 - 34640069
Alignment:
Q  27 cttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagc 89  Q
    |||||||||||||| |||||| ||||||| |||||| |  || ||||||||||| ||||||||    
T  34640007 cttatagcttatttctatgagcttatagcggtttataataagctaattcaagtagtttatagc 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 1621552 - 1621515
Alignment:
Q  112 tttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  1621552 tttttatctcaattttacccttgcaatcttaattgaaa 1621515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 16870029 - 16869953
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagctta 92  Q
    ||||||||||||||||| ||||||||||  || |||||||  ||| |||  || |||||||||||  ||||||||||    
T  16870029 tttctcacgaacttataccttatttttactagcttatagcgttttttgataagctaattcaagtagcttatagctta 16869953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 13800119 - 13799987
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaaagttaaataacttgtaactttt 115  Q
    ||||| |||| |||||||||||| ||||||   |||||||  ||| | |  ||||||||||||||  ||| ||  ||||||| | || ||| | ||||||    
T  13800119 tttctaacgagcttatagcttatctttatggtcttatagcgttttttcataagttaattcaagtaggttacagagtaaagttta-tagcttatcactttt 13800021  T
Q  116 tatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||||||||| |||||||    
T  13800020 tatctcaattttacccctgcaatcttaattgaaa 13799987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 32582526 - 32582565
Alignment:
Q  110 actttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  32582526 actttttatctcaattttacccttgcaatcttaattgaaa 32582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 54138514 - 54138476
Alignment:
Q  112 tttttatctcaattttacccctgcaatcttgattgaaat 150  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  54138514 tttttatctcaattttatctctgcaatcttgattgaaat 54138476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 1384224 - 1384300
Alignment:
Q  69 ttaattcaagtaatttatagcttaaagttaaataacttgtaactttttatctcaattttacccctgcaatcttgattg 146  Q
    |||| |||||||  ||||||||||||| | | |||||| | ||||||||||||| ||||||| |||||||||| ||||    
T  1384224 ttaactcaagtagcttatagcttaaagctta-taacttatcactttttatctcatttttaccgctgcaatcttaattg 1384300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 43822601 - 43822646
Alignment:
Q  104 cttgtaactttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    ||||| |||||||||||| ||||||||||||||||| | |||||||    
T  43822601 cttgtcactttttatctccattttacccctgcaatcctaattgaaa 43822646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 37083840 - 37083916
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagctta 92  Q
    |||||||||| |||||||||||||||||  || |||||||| ||| | |  || |||||||||||  ||||||||||    
T  37083840 tttctcacgagcttatagcttatttttactagcttatagcaatttttaataagctaattcaagtagcttatagctta 37083916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 49983 - 49907
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagctta 92  Q
    |||||||||| ||||||||||||||||| ||| ||||||| |||| |||  || |||||||||||  ||||||||||    
T  49983 tttctcacgagcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaagtagcttatagctta 49907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 49904 - 49865
Alignment:
Q  110 actttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  49904 actttttatctcaattttacccttgcaatcttaattgaaa 49865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 23051747 - 23051683
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagta 80  Q
    |||||||||| |||| |||||||||||||||||||||||| |||| |||  || |||||||||||    
T  23051747 tttctcacgagcttacagcttatttttatgagtttatagcggtttgtgataagctaattcaagta 23051683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 20435495 - 20435544
Alignment:
Q  100 ataacttgtaactttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    ||||||||| |||||||||||||||||||||||| |||| || |||||||    
T  20435495 ataacttgtcactttttatctcaattttacccctacaatatttattgaaa 20435544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 5291512 - 5291568
Alignment:
Q  24 gaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagta 80  Q
    ||||||||| ||||||||||||||| |||| || ||| |||  ||||||||||||||    
T  5291512 gaacttatatcttatttttatgagtgtatatcattttgtgataagttaattcaagta 5291568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 20792043 - 20791924
Alignment:
Q  21 cacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaaagttaaataacttgtaactttttatct 120  Q
    ||||| |||| | |||||||||||||||| ||||  |||| |||  || |||||||||||  ||||||||||||  | | |||||||| ||||||||| |    
T  20792043 cacgaccttacatcttatttttatgagttcatagtggtttttgataagctaattcaagtagcttatagcttaaatctta-taacttgtcactttttattt 20791945  T
Q  121 caattttacccctgcaatctt 141  Q
    | ||||||||||| |||||||    
T  20791944 ccattttacccctacaatctt 20791924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 5951926 - 5951852
Alignment:
Q  18 tctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagctta 92  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||  ||  || |||||||| ||||||||| ||||    
T  5951926 tctcacgatcttatagcttatttttatgagcttatagcggtttgagataagctaattcaaataatttataactta 5951852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 31117581 - 31117521
Alignment:
Q  200 aactataaacttgcttacaagttatcaactataagttcatctgatataagctaacttatca 260  Q
    |||||||| || ||||| |||| |||||||||||| ||||||| || ||||||||||||||    
T  31117581 aactataagctagcttataagtcatcaactataagctcatctgctacaagctaacttatca 31117521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 7583503 - 7583544
Alignment:
Q  100 ataacttgtaactttttatctcaattttacccctgcaatctt 141  Q
    ||||||| | ||||||||||||||||||| ||||||||||||    
T  7583503 ataacttttcactttttatctcaattttatccctgcaatctt 7583544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 31117731 - 31117694
Alignment:
Q  112 tttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  31117731 tttttatctcaattttacccctacaatcttaattgaaa 31117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 44809914 - 44809816
Alignment:
Q  49 ttatagcagtttatgactagttaattcaagtaatttatagcttaaagttaaataacttgtaactttttatctcaattttacccctgcaatcttgattgaa 148  Q
    ||||||| |||| |||  || |||||||||||  |||| ||||||||||  ||| ||| | || |||||||||||||||||||||||| |||||||||||    
T  44809914 ttatagcggtttgtgataagctaattcaagtagcttatggcttaaagtt-tatagcttatcac-ttttatctcaattttacccctgcagtcttgattgaa 44809817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 27863791 - 27863840
Alignment:
Q  100 ataacttgtaactttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    ||||||| | ||||||||||| ||||||||| ||| ||||||||||||||    
T  27863791 ataacttatcactttttatcttaattttacctctgtaatcttgattgaaa 27863840  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 27679304 - 27679360
Alignment:
Q  228 ctataagttcatctgatataagctaacttatcaatcataggttattttttaccaaac 284  Q
    ||||||||||||| |||||||| ||||| |||| | ||| | |||||||||||||||    
T  27679304 ctataagttcatccgatataagttaactcatcagttatacgctattttttaccaaac 27679360  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 27679398 - 27679438
Alignment:
Q  222 tatcaactataagttcatctgatataagctaacttatcaat 262  Q
    |||| |||||||||||||| |||||||| ||||||||||||    
T  27679398 tatccactataagttcatccgatataagttaacttatcaat 27679438  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 41090633 - 41090597
Alignment:
Q  113 ttttatctcaattttacccctgcaatcttgattgaaa 149  Q
    |||||||||||||||| |||||||||||| |||||||    
T  41090633 ttttatctcaattttatccctgcaatcttaattgaaa 41090597  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 42139378 - 42139453
Alignment:
Q  16 tttctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagctta 92  Q
    |||||||| | |||||||||||||||||| || ||||||| |||| || | || |||||||||||  ||||||||||    
T  42139378 tttctcacaagcttatagcttatttttattagcttatagcggttt-tgtcaagctaattcaagtagattatagctta 42139453  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 27316746 - 27316672
Alignment:
Q  18 tctcacgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagctta 92  Q
    ||||||||  ||||| ||||||||||| || |||||||| ||| ||   |||||||||||||| |||||||||||    
T  27316746 tctcacgagtttatatcttatttttattagcttatagcattttttggtaagttaattcaagtagtttatagctta 27316672  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 13544179 - 13544114
Alignment:
Q  28 ttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaa 93  Q
    ||||||||||||| ||||||||||||| ||||| |||  || ||||||||| || ||||| |||||    
T  13544179 ttatagcttatttgtatgagtttatagtagtttgtgataagctaattcaagaaacttataacttaa 13544114  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 13680294 - 13680359
Alignment:
Q  28 ttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaa 93  Q
    ||||||||||||| ||||||||||||| ||||| |||  || ||||||||| || ||||| |||||    
T  13680294 ttatagcttatttgtatgagtttatagtagtttgtgataagctaattcaagaaacttataacttaa 13680359  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 13896030 - 13895970
Alignment:
Q  27 cttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttata 87  Q
    |||||| |||||||| ||||||||||||  |||| |||  ||||||||||||||| |||||    
T  13896030 cttataacttattttcatgagtttatagttgtttttgataagttaattcaagtaacttata 13895970  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 3837017 - 3837046
Alignment:
Q  111 ctttttatctcaattttacccctgcaatct 140  Q
    ||||||||||||||||||||||||||||||    
T  3837017 ctttttatctcaattttacccctgcaatct 3837046  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 12137381 - 12137426
Alignment:
Q  219 agttatcaactataagttcatctgatataagctaacttatcaatca 264  Q
    |||||||  |||||||||||||| ||||||||||||||||| ||||    
T  12137381 agttatcctctataagttcatctaatataagctaacttatctatca 12137426  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 30046310 - 30046433
Alignment:
Q  22 acgaacttatagcttatttttatgagtttatagcagtttatgactagttaattcaagtaatttatagcttaaagttaaataacttgtaactttttatctc 121  Q
    |||| |||||| ||||||||| |||||||||| | |||| |||  ||||||||||||||  ||||| | |||||||  |||||||   ||||| ||||||    
T  30046310 acgagcttataacttattttt-tgagtttataacggtttgtgataagttaattcaagtagcttataacataaagtt-cataacttagcactttatatctc 30046407  T
Q  122 aattttacccctgcaatcttgattga 147  Q
    |||| ||| ||| ||||||| |||||    
T  30046408 aattatacacctacaatcttaattga 30046433  T

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