View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_44 (Length: 503)

Name: NF8971_low_44
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_44
NF8971_low_44
[»] chr6 (2 HSPs)
chr6 (153-306)||(24284425-24284577)
chr6 (16-100)||(24284638-24284722)
[»] chr3 (2 HSPs)
chr3 (17-94)||(8065627-8065704)
chr3 (153-216)||(8065495-8065558)
[»] chr4 (2 HSPs)
chr4 (16-94)||(12035055-12035133)
chr4 (153-224)||(12035196-12035267)
[»] chr2 (1 HSPs)
chr2 (16-94)||(20166994-20167072)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 153 - 306
Target Start/End: Complemental strand, 24284577 - 24284425
Alignment:
Q  153 aattgaatattctgacacccttttacgttttctcatgatttatgtgttaaagatttgattttttcattgtgtaa-nnnnnnnctcattttatgggttagt 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||    
T  24284577 aattgaatattctgatacccttttacgttttctcatgatttatgtgttaaagatttgattttttcgttgtgtaattttttttctcattttatgggttagt 24284478  T
Q  252 gtgtgtgcgcgcatgtgtggtttttgacgatgtttgaaggcttattgatgattta 306  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  24284477 gtgtgt--gcgcatgtgtggtttttgacgatgtttgaaggcttattgatgattta 24284425  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 24284722 - 24284638
Alignment:
Q  16 caatttcgctttggtttttgattttgcaggtatattaaacttgtttagagcttttgggttgtgtttatttgttctgattcaatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  24284722 caatttcgctttggtttttgattttgcaggtatattaaacttgtttagtgcttttgggttgtgtttatttgttccgattcaatgg 24284638  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 8065704 - 8065627
Alignment:
Q  17 aatttcgctttggtttttgattttgcaggtatattaaacttgtttagagcttttgggttgtgtttatttgttctgatt 94  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8065704 aattttgctttgttttttgattttgcaggtatattaaacttgtttagtgcttttgggttgtgtttatttgttctgatt 8065627  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 8065558 - 8065495
Alignment:
Q  153 aattgaatattctgacacccttttacgttttctcatgatttatgtgttaaagatttgatttttt 216  Q
    ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  8065558 aattgaatattctgatacccttttacgttttctcgtgatttatatgttaaagatttgatttttt 8065495  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 12035055 - 12035133
Alignment:
Q  16 caatttcgctttggtttttgattttgcaggtatattaaacttgtttagagcttttgggttgtgtttatttgttctgatt 94  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||    
T  12035055 caattttgctttggttttcgattttgcaggtatattaaacttgtttagtgcttttgggttgtgttgtattgttctgatt 12035133  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 12035196 - 12035267
Alignment:
Q  153 aattgaatattctgacacccttttacgttttctcatgatttatgtgttaaagatttgattttttcattgtgt 224  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||    
T  12035196 aattgaatattctgatacccttttacgttttctcgtgatttatgtattaaaggtttaattttttcgttgtgt 12035267  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 20167072 - 20166994
Alignment:
Q  16 caatttcgctttggtttttgattttgcaggtatattaaacttgtttagagcttttgggttgtgtttatttgttctgatt 94  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  20167072 caattttgctttgtttttcgattttgcaggtatattaaacttgtttagtgcttttgggttgtgtttattagttttgatt 20166994  T

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