View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_46 (Length: 494)
Name: NF8971_low_46
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 24190890 - 24190414
Alignment:
| Q |
1 |
attagacataaattatacaagagtattgagagatagatacctccttacgagtgacatcaacagtcactatcttgatagaatccatattttcacatccaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24190890 |
attagacataaattatacaagagtattgagagatagatacctccttacgagtgacatcaacagtcactatcttgatggaatccatattttcacatccaag |
24190791 |
T |
|
| Q |
101 |
atacttcagaagagaaacactatttcgagaaatttgagaattatcaggcttcacattcaaatcatctgagataagaaaagttgcggtcaccggaacaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24190790 |
atacttcagaagagaaacactatttcgagaaatttgagaattatcaggcttcacattcaaatcatctgagataagaaaagttgcggtcaccggaacaaaa |
24190691 |
T |
|
| Q |
201 |
ccattcttagcaggttttttaaccgcacataaattggttcttttcttttcacagcagtggcagtttcgcttcttaggtacattgatgcacttttggttgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24190690 |
ccattcttagcaggttttttaaccgcacataaattggttcttttcttttcacagcagtggcagtttcgcttcttaggtacattgatgcacttttggttgc |
24190591 |
T |
|
| Q |
301 |
tgctgcaattaaaaaacctcaatttttctgtgtcatcaatgttgagttttagatacttgcaatattcttccatggaattaattggtcgaaccaataattc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24190590 |
tgctgcaattaaaaaacctcaatttttctgtgtcatcaatgttgagttttagatacttgcaatattcttccatcgaattaattggtcgaaccaataattc |
24190491 |
T |
|
| Q |
401 |
tttttcaaaagctgacctaaaattatctttgtcaaggttggcaacactttgatataacaagcttaagcttccaacac |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24190490 |
tttttcaaaagctgacctaaaattatctttgtcaaggttggcaacactttgatataacaagcttaagcttccaacac |
24190414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 31 - 477
Target Start/End: Complemental strand, 24198099 - 24197654
Alignment:
| Q |
31 |
agatagatacctccttacgagtgacatcaacagtcactatcttgatagaatccatattttcacatccaagatacttcagaagaga--aacactatttcga |
128 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||| || ||||| || ||||||| || |
|
|
| T |
24198099 |
agatacatacctccttacgagtgacatccacagtcactatcttgatagtatctatgttttcacatccaagatacttgagtagagagaaatactattttga |
24198000 |
T |
|
| Q |
129 |
gaaatttgagaattatcaggcttcacattcaaatcatctgagataagaaaagttgcggtcaccggaacaaaaccattcttagcaggttttttaaccgcac |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | | | ||||||| ||| |
|
|
| T |
24197999 |
gaaagttgagaattatcaggcttcacattcaaatcatctgagataagaaaagttgctgttgccggaacaaaaccattcttaggatggtgtttaaccacac |
24197900 |
T |
|
| Q |
229 |
ataaattggttcttttcttttcacagcagtggcagtttcgcttcttaggtacattgatgcacttttggttgctgctgcaattaaaaaacctcaatttttc |
328 |
Q |
| |
|
|||| ||||||||||||||| ||||| | ||| ||||||||| ||| || ||||||| ||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
24197899 |
ataacgaggttcttttcttttcgcagcacttgcaatttcgcttcgcagggttatcaatgcactcttgtt---tgccacaattaaaagacctcaatttttc |
24197803 |
T |
|
| Q |
329 |
tgtgtcatcaatgttgagttttagatacttgcaatattcttccatggaattaattggtcgaaccaataattctttttcaaaagctgacctaaaattatct |
428 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||| || || ||| |
|
|
| T |
24197802 |
tgtgtcatcaatgttgagttttagatatttgcaatatcggtccattgaattaatcggtcgaaccaataattctttttcaatagctgacctgaatttctct |
24197703 |
T |
|
| Q |
429 |
ttgtcaaggttggcaacactttgatataacaagcttaagcttccaacac |
477 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||||||||||| |
|
|
| T |
24197702 |
ttgtcaaggttggccacactttcgtataacaaacttaagcttccaacac |
24197654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University