View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_5 (Length: 911)
Name: NF8971_low_5
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_5 |
 | |
|
| [»] scaffold0627 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 675; Significance: 0; HSPs: 33)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 14 - 732
Target Start/End: Complemental strand, 8644660 - 8643942
Alignment:
| Q |
14 |
catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644660 |
catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatcccacttatgttaatggtgcgcttcattggatcag |
8644561 |
T |
|
| Q |
114 |
atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644560 |
atttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga |
8644461 |
T |
|
| Q |
214 |
tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644460 |
tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg |
8644361 |
T |
|
| Q |
314 |
aatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggcc |
413 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644360 |
aatatgacattggagaatcatggactaaggtttacaacattgatactttgatcagtcctttgggcagacctgattcgcagcgttatggtttatgttggcc |
8644261 |
T |
|
| Q |
414 |
ggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcga |
513 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8644260 |
ggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaacatgctttcaaagtttttcga |
8644161 |
T |
|
| Q |
514 |
attcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctga |
613 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
8644160 |
attcacggcatttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctga |
8644061 |
T |
|
| Q |
614 |
atatccactcaaggtgagaatgtagctgctaagattttattttgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaa |
713 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644060 |
atatccactcaaggtaagaatgtagctgctaagattttattttgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaa |
8643961 |
T |
|
| Q |
714 |
tatatatgtgagcttccta |
732 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8643960 |
tatatatgtgagcttccta |
8643942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 14 - 675
Target Start/End: Complemental strand, 8637315 - 8636654
Alignment:
| Q |
14 |
catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||| | | |||| ||||||||||| ||| |||||| || ||||||||||||| |
|
|
| T |
8637315 |
catcatggagaaatgctgaagtggatccccaaatttctattggatcaaatatatggcttcgttatcccacttgtgtgaatggtacgattcattggatcag |
8637216 |
T |
|
| Q |
114 |
atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga |
213 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8637215 |
atttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctccagtgttacaaaatcaaaataatgga |
8637116 |
T |
|
| Q |
214 |
tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg |
313 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
8637115 |
tttcgtcataacgagtgtattcgcattggagaattaaggggattactttatatttgtgatacatcttttttccgtgatgttgcaatgtgggttatgaatg |
8637016 |
T |
|
| Q |
314 |
aatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggcc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
8637015 |
aatatggcattggagaatcatggactaaggtttacaacatcgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtatatgatggcc |
8636916 |
T |
|
| Q |
414 |
ggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || |
|
|
| T |
8636915 |
ggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttaga |
8636816 |
T |
|
| Q |
514 |
attcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctga |
613 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
8636815 |
attcaaggcacttcttccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctga |
8636716 |
T |
|
| Q |
614 |
atatccactcaaggtgagaatgtagctgctaagattttattttgattgacaaattgaatttg |
675 |
Q |
| |
|
||||||||||||||| ||||||||| | |||| |||||||||||||||| |||| ||||||| |
|
|
| T |
8636715 |
atatccactcaaggttagaatgtagattctaacattttattttgattgagaaatcgaatttg |
8636654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 14 - 649
Target Start/End: Complemental strand, 8678262 - 8677618
Alignment:
| Q |
14 |
catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || | ||||||||||| | ||||||||||||||||||||||| | |
|
|
| T |
8678262 |
catcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggctccgttatcccacttgtattaatggtgcgcttcattggatcgg |
8678163 |
T |
|
| Q |
114 |
atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga |
213 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8678162 |
atttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaatcatttccttctcctccagtatttcaaaatcataataatgga |
8678063 |
T |
|
| Q |
214 |
tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg |
313 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
8678062 |
tttcgttgtaacaagcgtattcacatgggaaaattaagaggattactttacatttgcgatacatatcctttccgtgatgttgcaatgtgggatatgaatg |
8677963 |
T |
|
| Q |
314 |
aatatggcattggagaatcatggactaaggtttacaagattgatactttggtc---------agtcctttgggcagacctgattcgcagcgttatggttt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
8677962 |
aatatggcattggagaatcatggactaaggtttacaacattgatattgtggtccgtcctgtcagtcctttgggcagacctgattcgcggcattatggttt |
8677863 |
T |
|
| Q |
405 |
atgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8677862 |
atgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaa |
8677763 |
T |
|
| Q |
505 |
gtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattg |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8677762 |
gtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattg |
8677663 |
T |
|
| Q |
605 |
aggtgctgaatatccactcaaggtgagaatgtagctgctaagatt |
649 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8677662 |
aggtgctgaatatccactcaaggtaagaatgtagctgctaagatt |
8677618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 76 - 656
Target Start/End: Complemental strand, 8535890 - 8535307
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| |||||||| || |||||| | |||||||| | | ||||||| |||||| |||||| || |||||||||| | || | |||| |
|
|
| T |
8535890 |
tatcccacttgtgtgaatggtgcactacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcat |
8535791 |
T |
|
| Q |
176 |
ttccttctcctccag---tgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||||| | |||| | |||| ||||||||||||||| |||||| ||||||||||| || |
|
|
| T |
8535790 |
ttccttctcctccacagatgtttggaaatcataataatggatttcttagtaatagacatattagcatgggagaattaaagggatttctttacatttgtga |
8535691 |
T |
|
| Q |
273 |
tac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcc |
371 |
Q |
| |
|
| | | || || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||| |
|
|
| T |
8535690 |
ttcgacctttttatc-tgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatacttcattcaatcc |
8535592 |
T |
|
| Q |
372 |
tttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtctt |
471 |
Q |
| |
|
|| || || | || | | | | | ||||||||| | ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
8535591 |
ttcggaaagtcgtgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgttatatcattcctgcaattgtttt |
8535492 |
T |
|
| Q |
472 |
atctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatct |
571 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| |||||||||||||| |||| | | ||| | ||| ||||| |||| ||||| ||||||||||||| | |
|
|
| T |
8535491 |
atctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattccaagtctaattt |
8535392 |
T |
|
| Q |
572 |
cattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttatttt |
656 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8535391 |
cattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaagaatgtagcttctaagattttatttt |
8535307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 76 - 656
Target Start/End: Original strand, 9074443 - 9075020
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||| |||| ||| || | ||||||| ||||||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
9074443 |
tatcccacttgtgtgaatggtgcacttcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcat |
9074542 |
T |
|
| Q |
176 |
ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga |
272 |
Q |
| |
|
||||||||||||| |||||| ||| || |||| |||| || | |||| | ||| |||||||||||||| |||||| ||||||||||| || |
|
|
| T |
9074543 |
ttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacagacatat---catgggagaattaaagggatttctttacatttgtga |
9074639 |
T |
|
| Q |
273 |
-tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcc |
371 |
Q |
| |
|
| | ||| || || ||||||| || |||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||| ||| |
|
|
| T |
9074640 |
ctggacatttttatc-tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatcc |
9074738 |
T |
|
| Q |
372 |
tttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtctt |
471 |
Q |
| |
|
|| |||| | | | | | | ||| |||||||| |||| |||||||||||||||| || |||||||||||||||||||||| || ||||||| || |
|
|
| T |
9074739 |
ttcgggctgtcttattacatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgtttt |
9074835 |
T |
|
| Q |
472 |
atctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatct |
571 |
Q |
| |
|
|||| ||||||||| |||||| ||| |||||||||||||||||||| || | | ||| | ||| ||||| |||| |||||| ||||||||||||| | |
|
|
| T |
9074836 |
atcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaattt |
9074935 |
T |
|
| Q |
572 |
cattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttatttt |
656 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | |||||||| |
|
|
| T |
9074936 |
cattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaagaatgtagcttctaatactttatttt |
9075020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 726 - 896
Target Start/End: Complemental strand, 8643921 - 8643751
Alignment:
| Q |
726 |
cttcctattttggtattttatttggagaaaggaaaacttgttaagtaataagtagtttttcaagattattccctaatattgttttaattgatataggtgt |
825 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8643921 |
cttcctattttggcattttatttggagaaaggaaaacttgttaagtaataagtagtttttcaagattattccttaatattgttttaattgatataggtgt |
8643822 |
T |
|
| Q |
826 |
gcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttggaatt |
896 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8643821 |
gcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagttctttgagatttggaatt |
8643751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 76 - 628
Target Start/End: Complemental strand, 8529326 - 8528780
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||| |||||||||| | | ||||||| |||||| |||||| || |||| |||||||||||| || | |
|
|
| T |
8529326 |
tatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgt |
8529227 |
T |
|
| Q |
176 |
ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga |
272 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||| ||| || ||| || |||| ||||||||||||||| |||||| || |||||||| || |
|
|
| T |
8529226 |
ttccttctcctccacatgtgtttggaaatca---taatgttttttgttgtag---gcctattagcatgggagaattaaagggatttctatacatttgtga |
8529133 |
T |
|
| Q |
273 |
tac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcc |
371 |
Q |
| |
|
| | | || | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| ||| |
|
|
| T |
8529132 |
tccgacctttatatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcc |
8529034 |
T |
|
| Q |
372 |
tttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtctt |
471 |
Q |
| |
|
||||| | || | | | | ||||||||||| | |||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| || |
|
|
| T |
8529033 |
tttggatcg---tgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgtttt |
8528937 |
T |
|
| Q |
472 |
atctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatt-tgttgaaataattccacatgttccaagtctaatc |
570 |
Q |
| |
|
| |||||| ||||| || ||| ||| |||||||||||||||||||| || | || |||| | ||||| |||| ||||| ||||||||||||| |
|
|
| T |
8528936 |
acctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatggga-gtcggataaattattttgaagtaatcccacacattccaagtctaatt |
8528838 |
T |
|
| Q |
571 |
tcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt |
628 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
8528837 |
tcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt |
8528780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 77 - 661
Target Start/End: Original strand, 1600018 - 1600585
Alignment:
| Q |
77 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
176 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| |||| ||||| ||| ||| ||| |||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1600018 |
atcccacttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatt |
1600117 |
T |
|
| Q |
177 |
tccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga- |
272 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||||| | || ||||| | | || ||||||||||||||| |||||| ||||||||||| || |
|
|
| T |
1600118 |
tccttctcctccacatgagtttggaaatcataataatggaacttgtggtaacagccatgttagcatgggagaattaaagggatttctttacatttgtgac |
1600217 |
T |
|
| Q |
273 |
tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcct |
372 |
Q |
| |
|
||| | || | || ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1600218 |
tacctttt--tatc-tgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaagtacgatacttcattcaatcct |
1600314 |
T |
|
| Q |
373 |
ttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtctta |
472 |
Q |
| |
|
|| ||| | ||| |||||||| |||| || ||||||||||||| || |||||||||||||||||| ||| | |||||| | | |
|
|
| T |
1600315 |
tt------------ttcatggtgttcgggtttatg---gccgatacaacactttgaagaaggtgctgccatattgttatatgattac---aattgtttaa |
1600396 |
T |
|
| Q |
473 |
tctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctc |
572 |
Q |
| |
|
|||| |||||||| | |||| || | ||||| |||| |||||| || | | ||| || | | |||||||||| || ||| ||||||||||||| || |
|
|
| T |
1600397 |
tctattatgaacctgcgaaatatcgatgcaaagcttttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttc |
1600496 |
T |
|
| Q |
573 |
attgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttattttgattg |
661 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | || |||||||||| |||| |
|
|
| T |
1600497 |
attgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaagaatgtagcttcaaatattttatttttattg |
1600585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 14 - 655
Target Start/End: Complemental strand, 8641822 - 8641186
Alignment:
| Q |
14 |
catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag |
113 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||||||| | || |||| | |||||||||| ||| ||| ||| |||||||| |||| |
|
|
| T |
8641822 |
catcatggagaaatgttgaagtggatcctcagatttctatt---------tcgagtcttaagtatcccacttgtgtgaatagtgttcttcattgaatcaa |
8641732 |
T |
|
| Q |
114 |
atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataat |
210 |
Q |
| |
|
|||||||| || ||||||| ||||| ||||||||||| ||||||||||| ||| | | |||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
8641731 |
atttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgtttggaaatcataataat |
8641632 |
T |
|
| Q |
211 |
---ggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattc-----ttttcgt-gatgttgcaatgt |
301 |
Q |
| |
|
||| ||| | ||||| || |||| |||||||||| |||| |||||| | ||||||||| ||| | || ||||| | ||||| || ||| |
|
|
| T |
8641631 |
aatggaattcatggtaacaggcttattagcatgggagagttaaagggatttccttacatttgtgatcgtgactcgacctttttctttgatgtcacagtgt |
8641532 |
T |
|
| Q |
302 |
gggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgata---ctttggtcagtcctttgggcagacctgat---tcgcagcg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||| | |||||||| |||| | | | | |
|
|
| T |
8641531 |
gggttatgaatgaatatggcattggagaatcatggactaaggcttacaacattgataatacttcagtcaattctttgggctatcctggtctcttttgggg |
8641432 |
T |
|
| Q |
396 |
ttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacat |
495 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||| || ||||| ||| |||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
8641431 |
ttatggtgtatgttggccggtaatacactttgaagatggtgctgcgttatggttatatcattcctgcaattgt-ttatctactatgaacccggga----- |
8641338 |
T |
|
| Q |
496 |
gctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggag |
595 |
Q |
| |
|
| ||||||||| |||||| || |||| ||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8641337 |
---tgcaaagttttcaaaattcatgggacttgttcagaaagagttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagg-- |
8641243 |
T |
|
| Q |
596 |
acaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttattt |
655 |
Q |
| |
|
|||||||| ||| | ||||| ||||||||| ||||||| ||| |||| ||||||||| |
|
|
| T |
8641242 |
--aatattgaagtgttaaatattcactcaaggcaagaatgttgcttctaa-attttattt |
8641186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 393 - 634
Target Start/End: Original strand, 8548128 - 8548369
Alignment:
| Q |
393 |
gcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaa |
492 |
Q |
| |
|
|||| ||| ||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||| | ||||| ||| |||||| | ||||| ||| |
|
|
| T |
8548128 |
gcgtcatgctttgtgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaa |
8548227 |
T |
|
| Q |
493 |
catgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaag |
592 |
Q |
| |
|
||| |||||| |||||||||||| ||| ||||||| ||| ||||| |||||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
8548228 |
tatggagtcaaagattttcgaattcatggctcttcttcacaatcatttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaag |
8548327 |
T |
|
| Q |
593 |
gagacaatattgaggtgctgaatatccactcaaggtgagaat |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8548328 |
gagacaatattgaggtgctgaatatccactcaaagtaagaat |
8548369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 237 - 682
Target Start/End: Complemental strand, 9003685 - 9003247
Alignment:
| Q |
237 |
catgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatgg |
336 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||| ||| | ||||||||||| ||||||||||| || ||||| || ||| |
|
|
| T |
9003685 |
catgggagaattaaggggatttctttacatttgtgactcatcctctctctttgatgttgcaacttgggttatgaaggagtatgg----------tcttgg |
9003596 |
T |
|
| Q |
337 |
actaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagaggggg |
436 |
Q |
| |
|
||||||||||||| |||||||||| | | |||||||||||| |||||| | | | | |||||| |||||||||||||||| ||||||||| | | |
|
|
| T |
9003595 |
actaaggtttacagcattgatacttccgccggtcctttgggcatacctgaatatccgtctagtggtttttgttggccggtaaaactgtttgaagagagtg |
9003496 |
T |
|
| Q |
437 |
ctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatt |
536 |
Q |
| |
|
|| ||||||||| ||| | || | ||||||| | |||||||||||||||||||||||| |||| |||||||| | ||||||| || || |||| |
|
|
| T |
9003495 |
cttgcatattgttttatgaatcgtacaattgtttagtctactatgaacccgagaaacatggattcagagtttttcaagttcacggggctcaatcaaaatt |
9003396 |
T |
|
| Q |
537 |
tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactca---aggtgagaa |
633 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||| | ||| || ||||||||| |||||||| ||||| || ||||| |||| || | |
|
|
| T |
9003395 |
agttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaaggaggtaagga |
9003296 |
T |
|
| Q |
634 |
tgtagctgctaagattttattttgattgacaaattgaatttgatgctcc |
682 |
Q |
| |
|
||||||| |||| |||| ||||| ||| | |||| ||||||||||||| |
|
|
| T |
9003295 |
tgtagcttctaatatttgattttcattaagtaattaaatttgatgctcc |
9003247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 763 - 895
Target Start/End: Complemental strand, 8636422 - 8636291
Alignment:
| Q |
763 |
ttgttaagtaataagtagtttttcaagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttcttt |
862 |
Q |
| |
|
|||||||| ||| | |||||||| | ||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
8636422 |
ttgttaagcaatcaatagtttttta-gattattccctcatattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttcttt |
8636324 |
T |
|
| Q |
863 |
ccttgtctcaacaagttctttgagatttggaat |
895 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |
|
|
| T |
8636323 |
ccttgtctcaacaaactgtttgagatttggaat |
8636291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 136 - 361
Target Start/End: Original strand, 2856667 - 2856895
Alignment:
| Q |
136 |
atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgta |
232 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||| | || | || || |
|
|
| T |
2856667 |
atattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgccta |
2856766 |
T |
|
| Q |
233 |
ttcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtga-tgttgcaatgtgggttatgaatgaatatggcattggagaat |
331 |
Q |
| |
|
|| | |||||||||| | |||||| ||||||||||| ||| || ||| | || || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2856767 |
ttagattgggagaattgaagggatttctttacatttgtcatagatcgtctct-cgagaatgttacaatgtgggttatgaatgaatatggcattggagaat |
2856865 |
T |
|
| Q |
332 |
catggactaaggtttacaagattgatactt |
361 |
Q |
| |
|
||||||||| |||||||| |||||||||| |
|
|
| T |
2856866 |
catggactattgtttacaacattgatactt |
2856895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 136 - 361
Target Start/End: Original strand, 2874277 - 2874505
Alignment:
| Q |
136 |
atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgta |
232 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||| | || | || || |
|
|
| T |
2874277 |
atattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgccta |
2874376 |
T |
|
| Q |
233 |
ttcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtga-tgttgcaatgtgggttatgaatgaatatggcattggagaat |
331 |
Q |
| |
|
|| | |||||||||| | |||||| ||||||||||| ||| || ||| | || || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2874377 |
ttagattgggagaattgaagggatttctttacatttgtcatagatcgtctct-cgagaatgttacaatgtgggttatgaatgaatatggcattggagaat |
2874475 |
T |
|
| Q |
332 |
catggactaaggtttacaagattgatactt |
361 |
Q |
| |
|
||||||||| |||||||| |||||||||| |
|
|
| T |
2874476 |
catggactattgtttacaacattgatactt |
2874505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 136 - 361
Target Start/End: Original strand, 2844840 - 2845068
Alignment:
| Q |
136 |
atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgta |
232 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||| | || | || || |
|
|
| T |
2844840 |
atattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccttagcatgccta |
2844939 |
T |
|
| Q |
233 |
ttcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatc |
332 |
Q |
| |
|
|| | |||||||||| | |||||| ||||||||||| ||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2844940 |
ttagattgggagaattgaagggatttctttacatttgtcatatatcgtctcttgagaatgttacaatgtgggttatgaatgaatatggcattggagaatc |
2845039 |
T |
|
| Q |
333 |
atggactaaggtttacaagattgatactt |
361 |
Q |
| |
|
|||||||| ||||||| |||||||||| |
|
|
| T |
2845040 |
atggactattgtttacagcattgatactt |
2845068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 787 - 896
Target Start/End: Complemental strand, 8677623 - 8677513
Alignment:
| Q |
787 |
aagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac-aagttctttga |
885 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| || || |||| |
|
|
| T |
8677623 |
aagattattcgctaatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaacaaatttgattga |
8677524 |
T |
|
| Q |
886 |
gatttggaatt |
896 |
Q |
| |
|
||||||||||| |
|
|
| T |
8677523 |
gatttggaatt |
8677513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 2904938 - 2905003
Alignment:
| Q |
296 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2904938 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt |
2905003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 794 - 874
Target Start/End: Complemental strand, 8640750 - 8640670
Alignment:
| Q |
794 |
ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac |
874 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
8640750 |
ttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaac |
8640670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 8547823 - 8547933
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
8547823 |
tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat |
8547922 |
T |
|
| Q |
176 |
ttccttctcct |
186 |
Q |
| |
|
||||||||||| |
|
|
| T |
8547923 |
ttccttctcct |
8547933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 538 - 659
Target Start/End: Original strand, 2905126 - 2905250
Alignment:
| Q |
538 |
gttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatatt---gaggtgctgaatatccactcaaggtgagaat |
634 |
Q |
| |
|
|||||| | |||| |||| ||||||||||||| |||||||| ||||| ||||| ||||||||| || ||||||||||| ||| ||||||||| ||| |
|
|
| T |
2905126 |
gttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaatgttgaggaggtgctgaacatctactcaaggtagtaat |
2905225 |
T |
|
| Q |
635 |
gtagctgctaagattttattttgat |
659 |
Q |
| |
|
|||||| ||| ||||||||||||| |
|
|
| T |
2905226 |
gtagcttataatattttattttgat |
2905250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 2904783 - 2904836
Alignment:
| Q |
136 |
atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca |
189 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2904783 |
atattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctcca |
2904836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 792 - 863
Target Start/End: Complemental strand, 8534772 - 8534701
Alignment:
| Q |
792 |
tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttc |
863 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| | ||||||| |||||||| ||||||||||| |
|
|
| T |
8534772 |
tattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttc |
8534701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 797 - 875
Target Start/End: Original strand, 8548782 - 8548860
Alignment:
| Q |
797 |
cctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaaca |
875 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| | ||||| || |||||||| |||||| |||| ||||||||||| |
|
|
| T |
8548782 |
cctaatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaaca |
8548860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 605
Target Start/End: Original strand, 2845149 - 2845273
Alignment:
| Q |
481 |
gaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaagg |
580 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| || || ||| | | |||||| ||||| | || ||||||||||||| |||||||| | |
|
|
| T |
2845149 |
gaacctgagaaacatgagttcaaagtttttcgaattcaagggacaactttaggagaagttgaagtaattgaatatattccaagtctaatatcattgaacg |
2845248 |
T |
|
| Q |
581 |
atgttgtgaaaggagacaatattga |
605 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
2845249 |
atgtcgtgaaaggagacaatgttga |
2845273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 2856547 - 2856588
Alignment:
| Q |
10 |
acatcatcatggagaaatgctgaagtagatcctcaaatttct |
51 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
2856547 |
acatcatcatggagaaatgttgaagtggatcctcaaatttct |
2856588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 830
Target Start/End: Original strand, 1601056 - 1601096
Alignment:
| Q |
790 |
attattccctaatattgttttaattgatataggtgtgcaaa |
830 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
1601056 |
attattcccaaatattgttttaatttatataggtgtgcaaa |
1601096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 605
Target Start/End: Original strand, 2857046 - 2857094
Alignment:
| Q |
557 |
ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattga |
605 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
2857046 |
ttccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga |
2857094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 875
Target Start/End: Complemental strand, 8528207 - 8528124
Alignment:
| Q |
792 |
tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaaca |
875 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| | ||||||| | |||||| || |||||||| |||||||||| |
|
|
| T |
8528207 |
tattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaaca |
8528124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 2874161 - 2874198
Alignment:
| Q |
14 |
catcatggagaaatgctgaagtagatcctcaaatttct |
51 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
2874161 |
catcatggagaaatgttgaagtggatcctcaaatttct |
2874198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 861
Target Start/End: Complemental strand, 8527910 - 8527865
Alignment:
| Q |
816 |
atataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctt |
861 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||||| |||| |
|
|
| T |
8527910 |
atataggtgtgcaaatattaaattgcatgaagaagatgaagatctt |
8527865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 861
Target Start/End: Original strand, 9075344 - 9075389
Alignment:
| Q |
816 |
atataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctt |
861 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||| |||| |
|
|
| T |
9075344 |
atataggtgtgcaaattttaaattgcatgaagagaatgaagatctt |
9075389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 615
Target Start/End: Original strand, 11354671 - 11354728
Alignment:
| Q |
558 |
tccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaat |
615 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| ||| || ||||||| |||| |
|
|
| T |
11354671 |
tccaggtctcatctcattgaaggatgttgttaaaggaggcaacatcgaggtgcagaat |
11354728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 615
Target Start/End: Complemental strand, 11372722 - 11372665
Alignment:
| Q |
558 |
tccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaat |
615 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| ||| || ||||||| |||| |
|
|
| T |
11372722 |
tccaggtctcatctcattgaaggatgttgttaaaggaggcaacatcgaggtgcagaat |
11372665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 76 - 628
Target Start/End: Complemental strand, 9443487 - 9442941
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||| |||||||||||||| ||||||| |||||| |||||| || ||||||||||||||||| |||| |
|
|
| T |
9443487 |
tatcccacttgtgtgaatggtgcacttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcat |
9443388 |
T |
|
| Q |
176 |
ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga |
272 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||| | | || ||| || |||| ||||||||||||||| |||||| || |||||||| || |
|
|
| T |
9443387 |
ttccttctcctccacatgtgtttggaaatc---ataatgtttattgtagta---ggcctattagcatgggagaattaaagggatttctatacatttgtga |
9443294 |
T |
|
| Q |
273 |
tac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcc |
371 |
Q |
| |
|
| | | || | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| ||| |
|
|
| T |
9443293 |
tccgacctttatatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcc |
9443195 |
T |
|
| Q |
372 |
tttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtctt |
471 |
Q |
| |
|
||||| | || | | | | ||||||||||| | |||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| || |
|
|
| T |
9443194 |
tttgg---atcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgtttt |
9443098 |
T |
|
| Q |
472 |
atctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatt-tgttgaaataattccacatgttccaagtctaatc |
570 |
Q |
| |
|
| |||||| ||||| || ||| ||| |||||||||||||||||||| || | || |||| | ||||| |||| | ||| ||||||||||||| |
|
|
| T |
9443097 |
acctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatggga-gtcggaaaaattattttgaagtaatccaacacattccaagtctaatt |
9442999 |
T |
|
| Q |
571 |
tcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt |
628 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
9442998 |
tcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt |
9442941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 861
Target Start/End: Complemental strand, 9442077 - 9442032
Alignment:
| Q |
816 |
atataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctt |
861 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||||||||||| |||| |
|
|
| T |
9442077 |
atataggtgtgcaaatattaaattacatgaagaaaatgaagatctt |
9442032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 1e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 228 - 605
Target Start/End: Complemental strand, 35780062 - 35779694
Alignment:
| Q |
228 |
gcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattgga |
327 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||||||||| || ||| |||| ||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
35780062 |
gcgtattagcatgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaa |
35779963 |
T |
|
| Q |
328 |
gaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttg |
427 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||| ||||| | || | ||| ||| ||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35779962 |
gaatcgtggactaaggtttacaacattgagacttcggtcaattctctaggctatcctatttcaccgcgttatggtttatgttggccggtaaaaccctttg |
35779863 |
T |
|
| Q |
428 |
aagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttc |
527 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||| ||| | ||||||||||||||||| || ||| |
|
|
| T |
35779862 |
a---------tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcg |
35779772 |
T |
|
| Q |
528 |
ttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattga |
605 |
Q |
| |
|
||| ||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35779771 |
ttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga |
35779694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 76 - 640
Target Start/End: Original strand, 48361569 - 48362138
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||| |||||||||| | | ||||||| ||||||| ||||||||| |||||||||||| |||| |||| |
|
|
| T |
48361569 |
tatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcat |
48361668 |
T |
|
| Q |
176 |
ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga |
272 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||||||| ||| | ||||| || |||| ||||||||||||||| |||||| ||||||||||| || |
|
|
| T |
48361669 |
ttccttctcctccacatgtgtttggaaatcataataatggaattcttggtaacaggcatattagcatgggagaattaaagggatttctttacatttgtga |
48361768 |
T |
|
| Q |
273 |
-tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcc |
371 |
Q |
| |
|
| | || || ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || ||||| | ||| ||| |
|
|
| T |
48361769 |
ctcgacctttgcatc-tgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaacatcaatactgcgttcaatcc |
48361867 |
T |
|
| Q |
372 |
tttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtctt |
471 |
Q |
| |
|
|| | |||| || ||| || || | |||| |||||| |||||||||||||||| || ||||||||||||||||||||||||| | | || | |
|
|
| T |
48361868 |
ttcgagcagttttgcttcttggcattcagcttta---tggccgataaaacactttgaagaaggtgctgccatattgttatatcattcctacgaccgttta |
48361964 |
T |
|
| Q |
472 |
atctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtc-----t |
566 |
Q |
| |
|
||||| |||||||| |||||| || | ||||| ||||| |||||||| | | ||| | | | ||||| |||| |||||| ||||||||| | |
|
|
| T |
48361965 |
atctattatgaacctgagaaatatagatgcaaagcttttcatattcacgggagtcgttcaggttcttttgaagtaatcccacatattccaagtctaattt |
48362064 |
T |
|
| Q |
567 |
aatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagct |
640 |
Q |
| |
|
||| |||||||||||||| |||||||||| ||||| |||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
48362065 |
aatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaagaatgtagct |
48362138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 35780202 - 35780089
Alignment:
| Q |
76 |
tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat |
175 |
Q |
| |
|
|||||||||| ||| ||||||| |||||| ||||||| |||||||| || ||| ||| ||||| ||||| ||||| ||| ||||||||||||| ||| |
|
|
| T |
35780202 |
tatcccacttgtgtgaatggtgtgcttcactggatcaaatttgaggggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggttgcagccat |
35780103 |
T |
|
| Q |
176 |
ttccttctcctcca |
189 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35780102 |
ttccttctcctcca |
35780089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 856
Target Start/End: Original strand, 48362518 - 48362584
Alignment:
| Q |
790 |
attattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaag |
856 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
48362518 |
attattcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaag |
48362584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 396 - 628
Target Start/End: Complemental strand, 5130876 - 5130640
Alignment:
| Q |
396 |
ttatggtttatgtt---ggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatct-actatgaacccgagaa |
491 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| || ||| || ||||||| ||||| |
|
|
| T |
5130876 |
ttatggtttatgtttttggccggtaaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaa |
5130777 |
T |
|
| Q |
492 |
acatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaa |
591 |
Q |
| |
|
| || | |||||||||||||||||| || |||| ||| || ||||| ||||||||||| || |||||||||| ||| | |||||| |||||||| |
|
|
| T |
5130776 |
atatagatacaaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaa |
5130677 |
T |
|
| Q |
592 |
ggagacaatattgaggtgctgaatatccactcaaggt |
628 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5130676 |
ggagacaatattgaggtgctgaatattcactcaaggt |
5130640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 26324202 - 26324264
Alignment:
| Q |
288 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaa |
350 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
26324202 |
tgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaa |
26324264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 268
Target Start/End: Complemental strand, 5131093 - 5130964
Alignment:
| Q |
139 |
ttgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattc |
235 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||| |||||||||||| |||||| |||||| |||||| ||| | | | ||||| ||| |
|
|
| T |
5131093 |
ttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatc---ataatgatttttatggcaccgagcatatcg |
5130997 |
T |
|
| Q |
236 |
gcatgggagaattaaggggattactttacattt |
268 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |
|
|
| T |
5130996 |
gcatgggagaattaaagggatttctttacattt |
5130964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 539 - 634
Target Start/End: Complemental strand, 4583 - 4488
Alignment:
| Q |
539 |
ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat |
634 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4583 |
ttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaagaat |
4488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 231 - 363
Target Start/End: Complemental strand, 4878 - 4746
Alignment:
| Q |
231 |
tattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaa |
330 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||| || || | || || ||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4878 |
tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa |
4779 |
T |
|
| Q |
331 |
tcatggactaaggtttacaagattgatactttg |
363 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| |
|
|
| T |
4778 |
tcatggactaaggtttaccacattaatactttg |
4746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 5054 - 4942
Alignment:
| Q |
77 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
176 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||||||| | |||| ||| |||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
5054 |
atcccacttgtgtgaatggtgcacttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatt |
4957 |
T |
|
| Q |
177 |
tccttctcctccagt |
191 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
4956 |
tccctctcccccagt |
4942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 545 - 634
Target Start/End: Complemental strand, 16716264 - 16716175
Alignment:
| Q |
545 |
taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat |
634 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16716264 |
taattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaagaat |
16716175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 16716518 - 16716447
Alignment:
| Q |
290 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
361 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
16716518 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacattgatactt |
16716447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 16716755 - 16716641
Alignment:
| Q |
77 |
atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt |
176 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||| ||| |||||||| |||| ||||||||||||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
16716755 |
atcccacttgtgtgaatggtgcacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatt |
16716656 |
T |
|
| Q |
177 |
tccttctcctccagt |
191 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
16716655 |
tccttctcccccagt |
16716641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 16716409 - 16716363
Alignment:
| Q |
412 |
ccggtaaaacactttgaagagggggctgccatattgttatatcattc |
458 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
16716409 |
ccggtaaaacactttgaagagggtgctggcgtattgttatatcattc |
16716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University