View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_54 (Length: 469)
Name: NF8971_low_54
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 5004136 - 5004371
Alignment:
| Q |
17 |
accttgtaatctggtcattggacacaagattcatgaactcagcatgaaatccgcaaaacgattattgtacttggcatcaaatcaatatcatcgttaacac |
116 |
Q |
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| T |
5004136 |
accttgtaatctggtcattgtacacaagattcatgaactcagcatgaaatccgcaaaacgattattgtacttggcatcaaatcaatattatcgtgaacac |
5004235 |
T |
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| Q |
117 |
aagaaataaactataccactaaccaagtaactgtcgagattagaggtatattcaatgttttctttgcccacgaagatcacgcaaaaatcaaaacttgttc |
216 |
Q |
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| T |
5004236 |
aagaaataaactataccactaaccaagtaactgtcgagattagaggtatattcaatgttttgtttgcccacggagatcacgcaaaaatcaaaacttgttc |
5004335 |
T |
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| Q |
217 |
cggtaaaatggatccaaattgattttttacttaatt |
252 |
Q |
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| T |
5004336 |
tggtaaaatggatccaaattgattttttacttaatt |
5004371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 320 - 457
Target Start/End: Original strand, 5004439 - 5004576
Alignment:
| Q |
320 |
gcttgagttttattagcgctgttcaactatttgcacgggtaatgagtaaaaacttcttcaatgaggagtcatttacttaataaagaccgcaacctattaa |
419 |
Q |
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| T |
5004439 |
gcttgagttttattagcgttgttcaactatttgcatgggtaatgagtaaaaacttcttcaatgaggagtcatttatttaataaagaccgcaacctattaa |
5004538 |
T |
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| Q |
420 |
ggatccaaaatggagaaagaaggaaaatttgtacatat |
457 |
Q |
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| T |
5004539 |
ggatccaaaatggagaaagaaggaaaatttgtacatat |
5004576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 27926978 - 27926934
Alignment:
| Q |
374 |
tcttcaatgaggagtcatttacttaataaagaccgcaacctatta |
418 |
Q |
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| T |
27926978 |
tcttcaatgagaagtcatttacttaataaggacctcaacctatta |
27926934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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