View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_55 (Length: 465)
Name: NF8971_low_55
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 30138118 - 30138554
Alignment:
| Q |
19 |
caccaactaaccaaattaagccactgaagattgaaacaatccaaagggtgaaataattacgatcatcgggttctcgaagcatatggtaaatgaaagaaga |
118 |
Q |
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| T |
30138118 |
caccaactaaccaaattaagccactgaagattgaaacaatccaaagggtgaaataattacgatcatcaggttctcgaagcatatggtaaatgaaagaaga |
30138217 |
T |
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| Q |
119 |
gataatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgttgaaggaagaaatcatgaga |
218 |
Q |
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| T |
30138218 |
gataatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgttgaaggaagaaatcatgaga |
30138317 |
T |
|
| Q |
219 |
gcaagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggttgttttgaagaatcctgctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30138318 |
gcaagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggttgttttgaagaatcctgctg |
30138417 |
T |
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| Q |
319 |
gaagacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatgaaagtgaggattggaatggc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30138418 |
gaagacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatgaaagtgaggattggaatggc |
30138517 |
T |
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| Q |
419 |
taaggttaaacctgaagcccatgcaattgatgtccat |
455 |
Q |
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| T |
30138518 |
taaggttaaacctgaagcccatgcaattgatgtccat |
30138554 |
T |
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