View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_56 (Length: 455)

Name: NF8971_low_56
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_56
NF8971_low_56
[»] chr2 (12 HSPs)
chr2 (231-443)||(5005610-5005822)
chr2 (15-181)||(5006180-5006346)
chr2 (55-163)||(16426581-16426690)
chr2 (53-147)||(29921446-29921540)
chr2 (128-181)||(6609560-6609613)
chr2 (132-181)||(30899891-30899940)
chr2 (55-147)||(40992266-40992359)
chr2 (128-178)||(16903410-16903460)
chr2 (128-181)||(6610029-6610082)
chr2 (128-181)||(15562026-15562079)
chr2 (128-181)||(16903883-16903936)
chr2 (128-181)||(30899399-30899452)
[»] chr3 (11 HSPs)
chr3 (233-434)||(26836499-26836700)
chr3 (15-181)||(26837066-26837235)
chr3 (55-147)||(37999508-37999600)
chr3 (57-147)||(38741307-38741397)
chr3 (54-147)||(46719705-46719798)
chr3 (51-124)||(46739683-46739756)
chr3 (128-181)||(24394720-24394773)
chr3 (128-181)||(5113207-5113260)
chr3 (128-181)||(20586081-20586134)
chr3 (128-181)||(20586570-20586623)
chr3 (128-181)||(26006155-26006208)
[»] chr6 (8 HSPs)
chr6 (55-177)||(28534779-28534901)
chr6 (55-181)||(18605011-18605137)
chr6 (53-176)||(1034735-1034859)
chr6 (51-163)||(10608228-10608340)
chr6 (51-148)||(930967-931064)
chr6 (128-181)||(7635133-7635186)
chr6 (128-181)||(18290481-18290534)
chr6 (53-109)||(9428033-9428089)
[»] chr5 (7 HSPs)
chr5 (44-181)||(42654846-42654983)
chr5 (128-181)||(3595786-3595839)
chr5 (128-181)||(7858336-7858389)
chr5 (128-181)||(8320884-8320937)
chr5 (128-181)||(8321373-8321426)
chr5 (128-181)||(12330648-12330701)
chr5 (132-181)||(24027196-24027245)
[»] chr1 (5 HSPs)
chr1 (55-181)||(32538415-32538541)
chr1 (54-143)||(49611471-49611560)
chr1 (128-181)||(38468915-38468968)
chr1 (128-181)||(43755858-43755911)
chr1 (126-178)||(32537657-32537709)
[»] chr7 (6 HSPs)
chr7 (55-181)||(33687662-33687788)
chr7 (55-147)||(44896090-44896182)
chr7 (55-163)||(41224754-41224863)
chr7 (55-147)||(29314625-29314718)
chr7 (129-181)||(33686935-33686987)
chr7 (128-181)||(25137421-25137474)
[»] chr4 (13 HSPs)
chr4 (55-163)||(39413534-39413642)
chr4 (54-147)||(52758621-52758714)
chr4 (53-176)||(11680290-11680414)
chr4 (53-176)||(11688569-11688693)
chr4 (55-147)||(49399474-49399566)
chr4 (55-147)||(31634147-31634240)
chr4 (51-163)||(25655547-25655659)
chr4 (51-147)||(53289517-53289613)
chr4 (51-149)||(3619040-3619138)
chr4 (53-147)||(12590113-12590207)
chr4 (51-163)||(46764280-46764392)
chr4 (128-181)||(5235383-5235436)
chr4 (128-181)||(20174979-20175032)
[»] scaffold0180 (1 HSPs)
scaffold0180 (51-147)||(23000-23096)
[»] chr8 (9 HSPs)
chr8 (53-176)||(41348158-41348282)
chr8 (55-163)||(41092200-41092309)
chr8 (55-147)||(35759151-35759243)
chr8 (45-163)||(42573607-42573725)
chr8 (51-156)||(36935666-36935771)
chr8 (51-147)||(30272142-30272238)
chr8 (62-181)||(42111525-42111643)
chr8 (383-428)||(28090818-28090863)
chr8 (58-163)||(35387381-35387485)
[»] scaffold0069 (1 HSPs)
scaffold0069 (45-99)||(1840-1894)
[»] scaffold0155 (1 HSPs)
scaffold0155 (55-163)||(17367-17476)
[»] scaffold0508 (1 HSPs)
scaffold0508 (128-181)||(4142-4195)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 231 - 443
Target Start/End: Complemental strand, 5005822 - 5005610
Alignment:
Q  231 agtatgattcctatctagtacaaatagaaagcatttatatcatggattgagtagcagtaagacaaagttaattctacattgaatcaaactaagtttttgt 330  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5005822 agtatgattcatatctagtacaaatagaaagcatttgtatcatggattgagtagcggtaagacaaagttaattctacattgaatcaaactaagtttttgt 5005723  T
Q  331 gtttcgacacatcttaataagaagaatggttgttgtggtaattacttgttctagcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtt 430  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5005722 gtttcgacacatcttaataagaaaaatggttgttgtggtaattacttgttctagcaattataatgaaaagttaatatcaaaatcggtggtgctggtggtt 5005623  T
Q  431 tattattgatgtc 443  Q
    |||||||||||||    
T  5005622 tattattgatgtc 5005610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 5006180 - 5006346
Alignment:
Q  15 cagagaaggatggaagcaaatgcgtttgttagggggagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgtt 114  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  5006180 cagagaaggatgaaagcaaatgcttttgttaggggaagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagacaatggtaaaattttgtt 5006279  T
Q  115 ccctacttaacccaatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||  ||||| ||||||| ||||||| ||| |||||||| ||||| ||||| ||||||||    
T  5006280 ccctacttaattcaatgattaaaaagtaactttctcatggtgggaataactatcattttccatgcta 5006346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 16426690 - 16426581
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| | |||||||||||| | |||||||||||| |||||||| || |    
T  16426690 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtattccctacttaatcaaatggttaaaaattaacttttccatg 16426591  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  16426590 gtgggaaaaa 16426581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 29921446 - 29921540
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||| |   ||||||| ||| ||||| ||||   ||||||||||||||||||||    
T  29921446 ggtggtggtggaagatgatgtcggaaaaatttaatgttgagagaccattataaaattgtgtaccctatttaatttaatggttaaaaactaacttt 29921540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 6609613 - 6609560
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||| || ||||||||||| || | ||||||||||||    
T  6609613 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatgcta 6609560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 30899891 - 30899940
Alignment:
Q  132 gttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||||||||||||||||| ||||||||||| || | ||||||||||||    
T  30899891 gttaaaaactaactttttcatggtgggaaaaattagcctttcccatgcta 30899940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 40992359 - 40992266
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||  ||||||| ||  ||||| | |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||    
T  40992359 tggtggtggaagatgatgaagaaaaaaatagtgtgttaaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttt 40992266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 16903460 - 16903410
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatg 178  Q
    ||||||||||||||||||||| || ||||||||||| || | |||||||||    
T  16903460 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatg 16903410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 6610029 - 6610082
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  6610029 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 6610082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 15562026 - 15562079
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  15562026 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 15562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 16903883 - 16903936
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  16903883 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 16903936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 30899452 - 30899399
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  30899452 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 30899399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 233 - 434
Target Start/End: Complemental strand, 26836700 - 26836499
Alignment:
Q  233 tatgattcctatctagtacaaatagaaagcatttatatcatggattgagtagcagtaagacaaagttaattctacattgaatcaaactaagtttttgtgt 332  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26836700 tatgattcctatctagtataaatagaaagcatttatatcatatattgagtagcagtaagacaaagttaattctacattgaatcaaactaagtttttgtgt 26836601  T
Q  333 ttcgacacatcttaataagaagaatggttgttgtggtaattacttgttctagcaattataatgaaaagttaatatcaaaatcggtggtgccggtggttta 432  Q
    ||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26836600 ttcgacacatcttaataagaaaaatgattgttgtcgtaaatacttgttctagcaattataatgaaaagttaatatcaaaatcgatggtgctggtggttta 26836501  T
Q  433 tt 434  Q
    ||    
T  26836500 tt 26836499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 26837066 - 26837235
Alignment:
Q  15 cagagaaggatggaagcaaatgcgtttgttaggggg---agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaatttt 111  Q
    ||||||||||||||||||||||| ||||||||| ||   ||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  26837066 cagagaaggatggaagcaaatgcttttgttaggcgggtaagggtggtggtggaagatgatgtggaaaaaattgagtgttgagagaccatggtaaaatttt 26837165  T
Q  112 gttccctacttaacccaatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||||||||||  ||||||||||||||||| |||  || ||||||| |||| | | ||||||||||||    
T  26837166 gttccctacttaattcaatggttaaaaactaattttcccatggtgggataaacaagcctttcccatgcta 26837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 37999600 - 37999508
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  37999600 tggtggtggaagatgatgtggaaaaaattgagtgttgagagatcatggtaaaattttgttccctacttaattcaatggttaaaaactaacttt 37999508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 38741397 - 38741307
Alignment:
Q  57 gtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    |||||||||||||  |||||||| ||| ||||||||||||| | ||||||||| ||||||||| |||| | |||||  |||||||||||||    
T  38741397 gtggtggaagatgtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 38741307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 46719798 - 46719705
Alignment:
Q  54 gtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||  || ||||| ||| | ||||||||||| | ||||||||| ||||||||| |||| | |||||  |||||||||||||    
T  46719798 gtggtggtggaagatgtggtagaaaatatttaatgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 46719705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 46739756 - 46739683
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaa 124  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||| | | | ||||| ||||||||| ||||    
T  46739756 agggtggtggtggaagatgatgtgacaaaaatttagtgttgagagaccatgatgaaattatgttccctatttaa 46739683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 24394720 - 24394773
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || ||||||||||||||    
T  24394720 aatggttaaaaactaactttcccatggtgggaaaaattagcatttcccatgcta 24394773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 5113260 - 5113207
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  5113260 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 5113207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20586134 - 20586081
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  20586134 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 20586081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 20586570 - 20586623
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  20586570 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 20586623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 26006208 - 26006155
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  26006208 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 26006155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 28534901 - 28534779
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||||| ||  || ||    
T  28534901 tggtggtggaagatgatgtggaaaaaattgagtgttgagagactatggtaaaattttgttccctatttaatccaatagttaaaaactaaccttcccatgg 28534802  T
Q  155 tgggaaaaactaacatttcccat 177  Q
    || ||||||||||||||| ||||    
T  28534801 tgagaaaaactaacattttccat 28534779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 18605137 - 18605011
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| | | ||||||| ||||||||||||||  ||||||||||||| |||||||  || ||    
T  18605137 tggtgatggaagatgatgtggaaaaaatttagtgttgagagaccatgataaaattatgttccctacttaattcaatggttaaaaattaactttcccatgg 18605038  T
Q  155 tgggaaaaactaacatttcccatgcta 181  Q
    ||| ||||| || | ||| ||||||||    
T  18605037 tggaaaaaattagccttttccatgcta 18605011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 1034859 - 1034735
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| |||||||   ||||||||||  | | ||||||| ||| ||||| |||| | ||||||||||||||||||||   |     
T  1034859 ggtggtggtggaagatgatgtgggaaaaatttgatgttgagagatcatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcctat 1034760  T
Q  153 ggt-gggaaaaactaacatttccca 176  Q
    ||| ||||||||||||| |||||||    
T  1034759 ggtggggaaaaactaacctttccca 1034735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 10608228 - 10608340
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||  |    
T  10608228 agggtggtggtggaagatgatgtggaaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttccc 10608327  T
Q  151 acggtgggaaaaa 163  Q
    | |||||||||||    
T  10608328 atggtgggaaaaa 10608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 931064 - 930967
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttt 148  Q
    ||||||||||||||||||||||| | ||| ||| ||||||||||||| |   ||| ||| ||||||||| |||| | |||||| ||||||||||||||    
T  931064 agggtggtggtggaagatgatgttggaaagatttagtgttgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttt 930967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 7635186 - 7635133
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  7635186 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 7635133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 18290481 - 18290534
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  18290481 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 18290534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 9428033 - 9428089
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaatt 109  Q
    |||||||||||||||||||||||  |||||| | ||||||||||  ||| |||||||    
T  9428033 ggtggtggtggaagatgatgtggggaaaatttaatgttgagagatcacgataaaatt 9428089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 42654983 - 42654846
Alignment:
Q  44 tagggggagggtggtggtggaagatgatgtggaaaaaat-taagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaacta 142  Q
    |||||| |||||||||||||||||| ||||| ||||||  ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  42654983 taggggaagggtggtggtggaagataatgtgaaaaaaaaataagtgttgagagaccatggtaaaattttgttccctacttaatccaatggttaaaaacta 42654884  T
Q  143 actttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||  || ||| |||||||||| | ||||||||||||    
T  42654883 actttcccatggt-ggaaaaactagcctttcccatgcta 42654846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3595839 - 3595786
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  3595839 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 3595786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 7858389 - 7858336
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  7858389 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 7858336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 8320937 - 8320884
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  8320937 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 8320884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 8321373 - 8321426
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  8321373 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 8321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 12330648 - 12330701
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  12330648 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 12330701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 24027245 - 24027196
Alignment:
Q  132 gttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||| || ||||||||||| || | ||||||||||||    
T  24027245 gttaaaaactaacttttccatggtgggaaaaattagcctttcccatgcta 24027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 32538415 - 32538541
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| | | ||| ||| ||||||||||||||  |||||||||||||||||||||| || ||    
T  32538415 tggtgatggaagatgatgtgaaaaaaatttagtgttgagagaccatgataacattatgttccctacttaattcaatggttaaaaactaacttttccatgg 32538514  T
Q  155 tgggaaaaactaacatttcccatgcta 181  Q
    ||||||||| || | ||||||||||||    
T  32538515 tgggaaaaattagcctttcccatgcta 32538541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 49611471 - 49611560
Alignment:
Q  54 gtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaa 143  Q
    ||||||||||||||||  |||||||| ||| ||||||||||||| | ||||||||| ||||||||| |||| | |||||  |||||||||    
T  49611471 gtggtggtggaagatgtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaa 49611560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 38468968 - 38468915
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  38468968 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 38468915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 43755911 - 43755858
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  43755911 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 43755858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 32537709 - 32537657
Alignment:
Q  126 ccaatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatg 178  Q
    ||||||||||||||||||||||  || ||||||||||| || | |||||||||    
T  32537709 ccaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatg 32537657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 33687662 - 33687788
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| |||||||||||||||||||  || ||||||||||||| | | ||| ||| ||||||||||||||  ||||||||||||||||||||| ||| ||    
T  33687662 tggtgatggaagatgatgtggaaaatttttagtgttgagagaccatgataacattatgttccctacttaattcaatggttaaaaactaactttctcatgg 33687761  T
Q  155 tgggaaaaactaacatttcccatgcta 181  Q
    ||| ||||| || | ||||||||||||    
T  33687762 tggaaaaaattagcctttcccatgcta 33687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 44896182 - 44896090
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| ||| ||||| |||| | ||||||||||||||||||||    
T  44896182 tggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaacttt 44896090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 41224754 - 41224863
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||  || |    
T  41224754 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatg 41224853  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  41224854 gtgggaaaaa 41224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 29314718 - 29314625
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||    
T  29314718 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttt 29314625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 33686987 - 33686935
Alignment:
Q  129 atggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||||||||||||||||  || ||||||||||| |||| ||||||||||||    
T  33686987 atggttaaaaactaactttcccatggtgggaaaaattaacctttcccatgcta 33686935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 25137474 - 25137421
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  25137474 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 25137421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 39413534 - 39413642
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||| | | ||||||| ||||| |||||||| ||||||||||||||||||||||   | ||    
T  39413534 tggtgatggaagatgatgtggaaaaaatttagtgtcgagagaccatgataaaattatgttctctacttaatccaatggttaaaaactaactttcctatgg 39413633  T
Q  155 tgggaaaaa 163  Q
    |||||||||    
T  39413634 tgggaaaaa 39413642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 52758621 - 52758714
Alignment:
Q  54 gtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||  |||||||| ||| | ||||||||||||| ||||||||| ||||||||| |||| | |||||  |||||||||||||    
T  52758621 gtggtggtggaagatgtggtggaaaatatttaatgttgagagactatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 52758714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 11680414 - 11680290
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||  ||     
T  11680414 ggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccat 11680315  T
Q  153 ggtggga-aaaactaacatttccca 176  Q
    ||||||| ||||||||| |||||||    
T  11680314 ggtgggaaaaaactaacctttccca 11680290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 11688693 - 11688569
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||  ||     
T  11688693 ggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccat 11688594  T
Q  153 ggtggga-aaaactaacatttccca 176  Q
    ||||||| ||||||||| |||||||    
T  11688593 ggtgggaaaaaactaacctttccca 11688569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 49399474 - 49399566
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| | | ||||| |||| | ||||||||||||||||||||    
T  49399474 tggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtataccctatttaatctaatggttaaaaactaacttt 49399566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 31634240 - 31634147
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||    
T  31634240 tggtggtggaagatgatgaagaaaaaaatagcgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttt 31634147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 25655547 - 25655659
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    ||||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| |||| |||| |||| | |||||| |||||||||||||  |    
T  25655547 agggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgtttcctatttaatctaatggtcaaaaactaactttccc 25655646  T
Q  151 acggtgggaaaaa 163  Q
    | |||||||||||    
T  25655647 atggtgggaaaaa 25655659  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 53289613 - 53289517
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||||| |||||||   |||| |||||| | | ||||||| ||| ||||| |||| | |||| ||||||| |||||||    
T  53289613 agggtggtggtggaagatgatgtgggaaaaatttgatgttcagagaccatgataaaattgtgtaccctatttaatctaatgattaaaaattaacttt 53289517  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 3619138 - 3619040
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttttt 149  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||  | | ||||||| |||  |||| |||| | ||| |||||||  |||||||||    
T  3619138 agggtggtggtggaagatgatgtgggaaaaatttaatgttgagagatcatgataaaattgtgtatcctatttaatctaatagttaaaacttaacttttt 3619040  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 12590113 - 12590207
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||    
T  12590113 ggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaacttt 12590207  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 46764392 - 46764280
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    ||||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| |||| |||| ||||   |||||| |||||||||||||  |    
T  46764392 agggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgtttcctatttaatttaatggtcaaaaactaactttccc 46764293  T
Q  151 acggtgggaaaaa 163  Q
    | |||||||||||    
T  46764292 atggtgggaaaaa 46764280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 5235436 - 5235383
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  5235436 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 5235383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20175032 - 20174979
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  20175032 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 20174979  T

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Target: scaffold0180 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 23000 - 23096
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||| | | ||||||| ||||||||| |||| | ||||||| ||||||||||||    
T  23000 agggtggtggtggaagatgatgtgacaaaaatttagtgttgagagaccatgataaaattatgttccctatttaatctaatggttcaaaactaacttt 23096  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 41348282 - 41348158
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| ||| ||||| |||| | ||||||||||||||||||||  ||     
T  41348282 ggtggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccat 41348183  T
Q  153 ggt-gggaaaaactaacatttccca 176  Q
    ||| ||||||||||||| |||||||    
T  41348182 ggtggggaaaaactaacctttccca 41348158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 41092309 - 41092200
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||| || |    
T  41092309 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttttccatg 41092210  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  41092209 gtgggaaaaa 41092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 35759151 - 35759243
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| ||| ||||| |||| | ||||||||||||||||||||    
T  35759151 tggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaacttt 35759243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 42573725 - 42573607
Alignment:
Q  45 agggggagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaac 144  Q
    ||||| ||||||||||||||||||||||||| ||| ||| | |||||||||||||   ||| ||  ||||||||| ||||   |||||| |||||||||     
T  42573725 aggggaagggtggtggtggaagatgatgtgggaaagatttaatgttgagagactataataacatcgtgttccctatttaatttaatggtcaaaaactaat 42573626  T
Q  145 tttttcacggtgggaaaaa 163  Q
    ||| ||| |||||||||||    
T  42573625 tttctcatggtgggaaaaa 42573607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 36935771 - 36935666
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  | | ||||||| ||| ||||| |||| | |||  ||||||| ||||||||||    
T  36935771 agggtggtggtggaagatgatgtggaaaaaatttgatgttgagagatcatgataaaattgtgtaccctatttaatctaattattaaaaattaactttttc 36935672  T
Q  151 acggtg 156  Q
    | ||||    
T  36935671 atggtg 36935666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 30272238 - 30272142
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  |   ||||||| ||| ||||| |||| | |||||||||||| |||||||    
T  30272238 agggtggtggtggaagatgatgtggaaaaaatttgatgttgagagatcataataaaattgtgtaccctatttaatctaatggttaaaaattaacttt 30272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 42111643 - 42111525
Alignment:
Q  62 ggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacggtgggaaa 161  Q
    |||||||||||||||||||||  ||||||||||||| | | ||||||| | |||||||  |||   |||||| |||||||||| ||| ||||||  ||||    
T  42111643 ggaagatgatgtggaaaaaatgtagtgttgagagaccatgataaaattatattccctatctaatttaatggtcaaaaactaac-tttccacggtatgaaa 42111545  T
Q  162 aactaacatttcccatgcta 181  Q
    ||||| | ||||||||||||    
T  42111544 aactagcttttcccatgcta 42111525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 28090863 - 28090818
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtgg 428  Q
    |||||||| |||||| |||||||| ||||||||||||||| |||||    
T  28090863 agcaattacaatgaagagttaataccaaaatcggtggtgctggtgg 28090818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 35387381 - 35387485
Alignment:
Q  58 tggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacggtgg 157  Q
    |||||||||||||||||| ||||||  ||| ||||||||| | | ||||| | |||| ||||  ||| | |||||| ||||||||||||| ||| |||||    
T  35387381 tggtggaagatgatgtggcaaaaatgtagtattgagagac-atgataaaagtgtgtttcctatctaatcaaatggtcaaaaactaactttctcaaggtgg 35387479  T
Q  158 gaaaaa 163  Q
     |||||    
T  35387480 aaaaaa 35387485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1840 - 1894
Alignment:
Q  45 agggggagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagacta 99  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  1840 aggggaagggtggtggtggaagatgatgtgggaaatatttagtgttgagagacta 1894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 17476 - 17367
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| || | | ||||||||||||||||||||  || |    
T  17476 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatg 17377  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  17376 gtgggaaaaa 17367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 4195 - 4142
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  4195 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 4142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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