View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_60 (Length: 438)

Name: NF8971_low_60
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_60
NF8971_low_60
[»] chr5 (10 HSPs)
chr5 (12-438)||(43312396-43312822)
chr5 (104-229)||(39486411-39486536)
chr5 (105-208)||(39454592-39454695)
chr5 (102-226)||(39480323-39480447)
chr5 (104-214)||(39450952-39451062)
chr5 (102-236)||(39458379-39458513)
chr5 (105-229)||(39464626-39464750)
chr5 (104-214)||(39475458-39475568)
chr5 (104-208)||(39471988-39472092)
chr5 (104-208)||(39460202-39460306)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 43312822 - 43312396
Alignment:
Q  12 gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnnnnnagttgttgtttaggatgaaga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  43312822 gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttttttagttgttgtttaggatgaaga 43312723  T
Q  112 aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtctccgtgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43312722 aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgt 43312623  T
Q  212 aaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaactactcat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43312622 aaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaaccactcat 43312523  T
Q  312 gttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312522 gttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcg 43312423  T
Q  412 ctgccttcgttgttgacatgttctgca 438  Q
    |||||||||||||||||||||||||||    
T  43312422 ctgccttcgttgttgacatgttctgca 43312396  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
Q  104 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 203  Q
    ||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| ||||| ||||||||  |||||||||||||||||    
T  39486411 gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt 39486510  T
Q  204 ctccgtgtaaccgtcttggtcatcaa 229  Q
    |||||  ||||| |||||||||||||    
T  39486511 ctccgaataaccatcttggtcatcaa 39486536  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
Q  105 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 204  Q
    |||||||||  |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||||  ||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  205 tccg 208  Q
    ||||    
T  39454692 tccg 39454695  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
Q  102 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 201  Q
    ||||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| || || ||||||||  |||||||||||||||    
T  39480323 aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc 39480422  T
Q  202 gtctccgtgtaaccgtcttggtcat 226  Q
    |||||||  |||| || ||||||||    
T  39480423 gtctccgaataactgttttggtcat 39480447  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
Q  104 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 203  Q
    ||||||||||  |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || ||||||||  |||| ||||||||||||    
T  39450952 gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt 39451051  T
Q  204 ctccgtgtaac 214  Q
    ||||| |||||    
T  39451052 ctccgagtaac 39451062  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
Q  102 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 201  Q
    ||||||||||||  |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| ||||||||  |||||||||||||||    
T  39458513 aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc 39458414  T
Q  202 gtctccgtgtaaccgtcttggtcatcaagtttcca 236  Q
    |||||||  ||||  |||||||||| || ||||||    
T  39458413 gtctccgaataactatcttggtcatgaaatttcca 39458379  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
Q  105 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 204  Q
    |||||||||  |||||| ||||||||||||| ||| | ||| || ||| |||| ||  ||||||||||||| ||||||||  ||||||||||||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
Q  205 tccgtgtaaccgtcttggtcatcaa 229  Q
    ||||  ||||| |||| ||||||||    
T  39464650 tccgaataaccatcttagtcatcaa 39464626  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
Q  104 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 203  Q
    ||||||||||  |||||||||||||||||||| ||| ||| || | ||| || | ||||| ||||||||||  ||||||||  |||| ||||||||||||    
T  39475458 gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt 39475557  T
Q  204 ctccgtgtaac 214  Q
    ||||| |||||    
T  39475558 ctccgagtaac 39475568  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
Q  104 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 203  Q
    ||||||||||  ||||||||||||| |||||| ||| | || ||| ||| |||| ||  | || |||||||| ||||||||  |||||||||||||||||    
T  39471988 gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt 39472087  T
Q  204 ctccg 208  Q
    |||||    
T  39472088 ctccg 39472092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 39460202 - 39460306
Alignment:
Q  104 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 203  Q
    ||||||||||  |||||| ||||||||||||| ||| |||  | | ||| |||  |||||||||||||| || ||||||||   |||||||||||| ||     
T  39460202 gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgc 39460301  T
Q  204 ctccg 208  Q
    |||||    
T  39460302 ctccg 39460306  T

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