View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_63 (Length: 419)

Name: NF8971_low_63
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_63
NF8971_low_63
[»] chr7 (4 HSPs)
chr7 (17-419)||(673039-673440)
chr7 (184-236)||(17120576-17120628)
chr7 (121-232)||(37579110-37579221)
chr7 (121-213)||(26874213-26874305)
[»] chr4 (4 HSPs)
chr4 (293-338)||(12075624-12075668)
chr4 (115-151)||(52602942-52602978)
chr4 (121-151)||(37348972-37349002)
chr4 (121-150)||(37107260-37107289)
[»] chr6 (2 HSPs)
chr6 (232-319)||(16405420-16405507)
chr6 (121-151)||(12678308-12678338)
[»] scaffold0294 (1 HSPs)
scaffold0294 (121-151)||(14618-14648)
[»] chr8 (1 HSPs)
chr8 (244-338)||(27777190-27777283)
[»] chr5 (1 HSPs)
chr5 (121-151)||(3573067-3573097)
[»] chr2 (2 HSPs)
chr2 (111-213)||(10644030-10644132)
chr2 (121-151)||(14540629-14540659)
[»] chr3 (2 HSPs)
chr3 (121-154)||(830852-830885)
chr3 (293-338)||(19111786-19111830)
[»] chr1 (1 HSPs)
chr1 (169-213)||(38830130-38830174)


Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 673440 - 673039
Alignment:
Q  17 atctcctccccgtctctgacgggttagggtatctatgttccatcctcacacccacattgaatcattttttgttaatagttttgttttcctgctctgaaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  673440 atctcctccccgtctctgacgggttagggtatctatgttccatcctcatacccacgttgaatcattttttgttaatagttttgttttcctgctctgaaga 673341  T
Q  117 caaagttgtaatgcattatccagcaatatgctcacgttggaatttccgtgatcgaatgatttggtcactcatttaaatatcaatgacaacttttatagca 216  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  673340 caaagttgtaatgcattatccaacaatatgctcactttagaatttccgtgatctaatgatttggtcactcatttaaatatcaatgacaacttttatagca 673241  T
Q  217 ttgcaattatcaaacatttggggacgtgtttgggtatgaattcggggtgggaacgaatatctctgatatttgtccagtacccgtgttttgaaattcggaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||| || |||| |    
T  673240 ttgcaattatcaaacatttggggacgtgtttgggtatgaattcagggtgggaacgaatatctatgttattcgtccagtacccgtgttttggaa-tcggga 673142  T
Q  317 aaaactcaaacttatacccaaatttaatcaaggcagagaaattccgtcaagttggcttaggtttagacaggtacatgcagggttcgggtttcgatgtatg 416  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  673141 aaaactcaaacttatatccaaatttaatcaaggcagagaaattccgtcaaatcggcttaggtttagacaggtacatgcagggttcgggtttcgatgtatg 673042  T
Q  417 tct 419  Q
    |||    
T  673041 tct 673039  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 17120576 - 17120628
Alignment:
Q  184 ctcatttaaatatcaatgacaacttttatagcattgcaattatcaaacatttg 236  Q
    |||||||||||||||||||||| ||||||| |||  |||||||||||||||||    
T  17120576 ctcatttaaatatcaatgacaaattttataacatgtcaattatcaaacatttg 17120628  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 37579110 - 37579221
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcacgttggaatttccgtgatcgaatgatttggtcactcatttaaatatcaatgacaacttttatagcattgc 220  Q
    |||||||| ||||||| |||||||||||||| ||   ||||    ||| || |||||| ||  ||||||||||||||||||| || ||||||| |||  |    
T  37579110 gttgtaatacattatctagcaatatgctcactttaacatttgttagatggattgatttagttgctcatttaaatatcaatgataatttttataacatgac 37579209  T
Q  221 aattatcaaaca 232  Q
    ||||||||||||    
T  37579210 aattatcaaaca 37579221  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 26874213 - 26874305
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcacgttggaatttccgtgatcgaatgatttggtcactcatttaaatatcaatgacaacttttata 213  Q
    ||||||||||||||||||| |||||| || | ||   |||||| ||| | ||||||||| |  ||| |||||||||||||||||  |||||||    
T  26874213 gttgtaatgcattatccagtaatatgttcgctttaacatttccttgaccaaatgatttgcttgctcctttaaatatcaatgacactttttata 26874305  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 12075668 - 12075624
Alignment:
Q  293 gtacccgtgttttgaaattcggaaaaaactcaaacttatacccaaa 338  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  12075668 gtacccgtgttttgaaatt-ggaaaaaactcaaactcatacccaaa 12075624  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 52602942 - 52602978
Alignment:
Q  115 gacaaagttgtaatgcattatccagcaatatgctcac 151  Q
    ||||| |||||||||||||||||||||||||||||||    
T  52602942 gacaatgttgtaatgcattatccagcaatatgctcac 52602978  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 37348972 - 37349002
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcac 151  Q
    |||||||||||||||||||||||||||||||    
T  37348972 gttgtaatgcattatccagcaatatgctcac 37349002  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 37107260 - 37107289
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctca 150  Q
    ||||||||||||||||||||||||||||||    
T  37107260 gttgtaatgcattatccagcaatatgctca 37107289  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 16405507 - 16405420
Alignment:
Q  232 atttggggacgtgtttgggtatgaattcggggtgggaacgaatatctctgatatttgtccagtacccgtgttttgaaattcggaaaaa 319  Q
    |||| |||||| ||||| |||||| ||| ||||| | ||  ||||||||| || |||| | ||| |||||||||||||||||||||||    
T  16405507 atttcgggacgggtttgagtatgagttcagggtgtgtacatatatctctggtacttgttccgtatccgtgttttgaaattcggaaaaa 16405420  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 12678338 - 12678308
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcac 151  Q
    |||||||||||||||||||||||||||||||    
T  12678338 gttgtaatgcattatccagcaatatgctcac 12678308  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 14618 - 14648
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcac 151  Q
    |||||||||||||||||||||||||||||||    
T  14618 gttgtaatgcattatccagcaatatgctcac 14648  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 27777283 - 27777190
Alignment:
Q  244 gtttgggtatgaattcggggtgggaacgaatatctctgatatttgtccagtacccgtgttttgaaattcggaaaaaactcaaacttatacccaaa 338  Q
    |||||||||||  ||||||||||| ||   |||||||| ||  ||||| ||||| ||||||||||| |||| ||||||||||||  |||||||||    
T  27777283 gtttgggtatgggttcggggtgggtacctgtatctctgttacctgtcccgtacctgtgttttgaaa-tcgggaaaaactcaaacacatacccaaa 27777190  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 3573067 - 3573097
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcac 151  Q
    |||||||||||||||||||||||||||||||    
T  3573067 gttgtaatgcattatccagcaatatgctcac 3573097  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 10644132 - 10644030
Alignment:
Q  111 tgaagacaaagttgtaatgcattatccagcaatatgctcacgttggaatttccgtgatcgaatgatttggtcactcatttaaatatcaatgacaactttt 210  Q
    ||||| ||| |||||||||||||||| |||||||||||| | ||   |||||| | | ||||| |||| ||  ||| ||||||| |||||||||| ||||    
T  10644132 tgaaggcaatgttgtaatgcattatcgagcaatatgctccctttaacatttccttaaccgaataatttagttgctcttttaaatttcaatgacaaatttt 10644033  T
Q  211 ata 213  Q
    |||    
T  10644032 ata 10644030  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 14540629 - 14540659
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcac 151  Q
    |||||||||||||||||||||||||||||||    
T  14540629 gttgtaatgcattatccagcaatatgctcac 14540659  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 830852 - 830885
Alignment:
Q  121 gttgtaatgcattatccagcaatatgctcacgtt 154  Q
    |||||||| |||||||||||||||||||||||||    
T  830852 gttgtaatacattatccagcaatatgctcacgtt 830885  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 19111786 - 19111830
Alignment:
Q  293 gtacccgtgttttgaaattcggaaaaaactcaaacttatacccaaa 338  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||    
T  19111786 gtacccgtgttttgaaat-cgggaaaaactcaaactcatacccaaa 19111830  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 38830174 - 38830130
Alignment:
Q  169 cgaatgatttggtcactcatttaaatatcaatgacaacttttata 213  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||    
T  38830174 cgaatgatttggttactcatttacatatcaatgacattttttata 38830130  T

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