View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_64 (Length: 411)
Name: NF8971_low_64
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 43053010 - 43053410
Alignment:
| Q |
1 |
cttaaccttcaaccaccaccaaataagaattttaactttatcaaacaaaaacacgacagttatctccttctcatcgaacaccttattatttctttctttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43053010 |
cttaaccttcaaccaccaccaaataagaattttaactttatcaaacaaaaacacgacagttatctccttctcatcgaacaccttattgtttctttctttc |
43053109 |
T |
|
| Q |
101 |
catacaatcccacaacaagccactaaaatagcttgtaaacaatgtccaactgctatttgctacaaaattgaaacgcatgaacctgagcatcgataacaaa |
200 |
Q |
| |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43053110 |
catgcaatcccacaacaagct---------gcttgtaaacaatgtccaactgctatttgctacaaaattgaaacgcatgaacctgagcatcgataacaaa |
43053200 |
T |
|
| Q |
201 |
acactatagacacctagccactttaagatttatctccagaaccacctatgcaaagtgacgaataattagatgtttcatcatttctacaaccacccaagca |
300 |
Q |
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|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43053201 |
acactatagatacctagccactttaagatttatttccagaaccacctatgcaaagtgacgaataattagatgtttcatcatttctacaaccacctaagca |
43053300 |
T |
|
| Q |
301 |
aagtgaagaagccaaatgagtcatgccccaacgaatcaaattatccttcactgacaacattttgagaaatgacctcgaaacaaac--agatgttttcaac |
398 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43053301 |
aagtgaagaagccaaatgagtcatgccccaacgaatcaaattacccttcactgacaacattttgagaaatgacctcgaaacaaacaaagatgttttcaat |
43053400 |
T |
|
| Q |
399 |
ggaatcattt |
408 |
Q |
| |
|
|||||||||| |
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|
| T |
43053401 |
ggaatcattt |
43053410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 30428401 - 30428470
Alignment:
| Q |
163 |
caaaattgaaacgcatgaacctgagcatcgata-acaaaacactatagacacctagccactttaagattt |
231 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |||| ||||||||||| ||||||||||||||||||||||| |
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| T |
30428401 |
caaaattggaacgcgtgaatctgagcattgatagacaaaacactagggacacctagccactttaagattt |
30428470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30428227 - 30428330
Alignment:
| Q |
1 |
cttaaccttcaaccaccaccaaataagaattttaactttatcaaacaaaaacacgacagttatctccttctcatcgaacaccttattatttctttctttc |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||| ||||||| ||||| | | || |||||||||| |||||||||| | |||||| ||||||| |
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|
| T |
30428227 |
cttaaccatcaaccaccaccaaacaagaatgttaacattatcaagaaaaaatgcaattgtcatctccttctgatcgaacaccctgttatttatttctttt |
30428326 |
T |
|
| Q |
101 |
cata |
104 |
Q |
| |
|
|||| |
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|
| T |
30428327 |
cata |
30428330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 34897681 - 34897645
Alignment:
| Q |
8 |
ttcaaccaccaccaaataagaattttaactttatcaa |
44 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||| |
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|
| T |
34897681 |
ttcaaccaccaccaaatatgaattttaacttgatcaa |
34897645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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