View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_66 (Length: 399)
Name: NF8971_low_66
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 234 - 382
Target Start/End: Complemental strand, 47127150 - 47127002
Alignment:
| Q |
234 |
gcaacttactaagtatcaattttaaaaatatgtacatacatttgtaaatatatatgagatgagaattacattggaaaatataaaattaacacatgtatat |
333 |
Q |
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| T |
47127150 |
gcaactcactaagtatcaattttaaaaatatgtacatacatgtgtaaatatatatgagatgagaattacattggaaaatataaaattaacacatgtatat |
47127051 |
T |
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| Q |
334 |
tatagaactttgcacctgaaaacccagcttttaataaatttggtcgcct |
382 |
Q |
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| T |
47127050 |
tatagaactttgcacctgaaaacccagcttttaataaatttggtcgcct |
47127002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 47127372 - 47127200
Alignment:
| Q |
17 |
aagtttaaacataaataaagtcaaaaacataatacta---gacaatattacgactnnnnnnnaacattgtacttatacactttaccacatgatgataatt |
113 |
Q |
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| T |
47127372 |
aagtttaaacatgaataaagtcaaaaacataatactactagacaatattacgactccccc--aacattgtacttatacactttaccacatgatgataatt |
47127275 |
T |
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| Q |
114 |
gaaaatgtaaacggtaacatggaaaacttacgaaatgcatcacattgcccttcaaccggaagcttcaagtcatct |
188 |
Q |
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| T |
47127274 |
gaaaatgtaaacggtaacatggaaaacttacgaaacgcatcacattgcccttcaaccggaagcttcaagtcatct |
47127200 |
T |
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