View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_68 (Length: 393)
Name: NF8971_low_68
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 23 - 383
Target Start/End: Original strand, 29007452 - 29007813
Alignment:
| Q |
23 |
agggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccatt |
122 |
Q |
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| T |
29007452 |
agggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccatt |
29007551 |
T |
|
| Q |
123 |
ctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007552 |
ctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgt |
29007651 |
T |
|
| Q |
223 |
agccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007652 |
agccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaa |
29007751 |
T |
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| Q |
323 |
-ttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctg |
383 |
Q |
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| T |
29007752 |
tttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctg |
29007813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 60 - 369
Target Start/End: Complemental strand, 21409730 - 21409421
Alignment:
| Q |
60 |
gtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtga |
159 |
Q |
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| T |
21409730 |
gtgttgttggactgagcttgaactttgactttgagtttcaggccttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatga |
21409631 |
T |
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| Q |
160 |
ggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacgg |
259 |
Q |
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|||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| |
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| T |
21409630 |
cgtggatcactgtttctcctgagttgtatgtcgaaatggcatttgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacgg |
21409531 |
T |
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| Q |
260 |
tgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaattca-agtctcgaaaaatacactttacattgttccca |
358 |
Q |
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| T |
21409530 |
tgtgtaagtaaacactgtcaatcatcacatatccaatgaa-catttgttattaccaattttaatttagacattcgaaaaatacactttactttgttcctg |
21409432 |
T |
|
| Q |
359 |
cctcttatttt |
369 |
Q |
| |
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|| |||||||| |
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| T |
21409431 |
ccacttatttt |
21409421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 153 - 369
Target Start/End: Complemental strand, 21461926 - 21461710
Alignment:
| Q |
153 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt |
252 |
Q |
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|||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||| || |
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| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt |
21461827 |
T |
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| Q |
253 |
ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaattca-agtctcgaaaaatacactttacatt |
351 |
Q |
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| T |
21461826 |
acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaa-catttgttattactaattttaatttatacattcaaaaaatacactttacttt |
21461728 |
T |
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| Q |
352 |
gttcccacctcttatttt |
369 |
Q |
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||||| || |||||||| |
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| T |
21461727 |
gttcctgccacttatttt |
21461710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 21465543 - 21465429
Alignment:
| Q |
23 |
agggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccatt |
122 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| |
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| T |
21465543 |
agggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggccttgttggcaatggcccatt |
21465444 |
T |
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| Q |
123 |
ctgccacaaacgaag |
137 |
Q |
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||||||||||||||| |
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| T |
21465443 |
ctgccacaaacgaag |
21465429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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