View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_69 (Length: 389)
Name: NF8971_low_69
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 36 - 375
Target Start/End: Complemental strand, 40047904 - 40047576
Alignment:
| Q |
36 |
gttctggagcaaatttacttggaattcaaggaacagcttatatatctattggagtagcttttgttgcagtggcaatgttatggagttgaatatcattata |
135 |
Q |
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| T |
40047904 |
gttctggagcaaatttacttggaattcaaggaacagcttatatatctattggagtagcttttgttgcagtggcaatgttatggagttgaagatcatcata |
40047805 |
T |
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| Q |
136 |
catcacccatttggcagctgcatatgaatgatttcaaacaattaaccatattttaannnnnnnnnnnnccagttctgttctgttcttggtttgaaccatg |
235 |
Q |
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| T |
40047804 |
catcacccatttggcagctgcatatgaatgatttcaaacaattaaccatattttaa--ttttttttttccagttctgttctgttgttggtttgaaccatg |
40047707 |
T |
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| Q |
236 |
ttcattttattccttgtaaaaatgtttgaatttgaatatccattgagtaatttgatttaatctatatatgcatcaaattgaaacaatcgctatagatata |
335 |
Q |
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| T |
40047706 |
ttcattttattccttgtaaaaatgtttgaatttgaatatccattgagtaatttgatttaatctatatatgcatcaaattgaaacaatcgctatag----- |
40047612 |
T |
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| Q |
336 |
tatcatatattggatgagaaaaacttcaggatagcattga |
375 |
Q |
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| T |
40047611 |
----atatattggatgagaaaaacttcaggatagcattga |
40047576 |
T |
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