View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_72 (Length: 384)
Name: NF8971_low_72
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 7969621 - 7969998
Alignment:
| Q |
1 |
catttagaaaccatcgcatctctattctcaa--ccctcttttttattatttggcattgtcacaaacttttgtttctcagaagtttcattagctcattttg |
98 |
Q |
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| T |
7969621 |
catttagaaaccatcgcatctctattctcaaaaccctcttttttattatttggcattgtcacaaacttttgtttctcagaagtttcattagctcattttg |
7969720 |
T |
|
| Q |
99 |
attgcaatcaatctcaaaaccattctctctaatggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctacaaagaaggga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969721 |
attgcaatcaatctcaaaaccattctctctaatggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctacaaagaaggga |
7969820 |
T |
|
| Q |
199 |
cgtagcggatatgaaccatcagacacagagacggagtggcaagacactccacgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969821 |
cgtagcggatatgaaccatcagacacagagacggagtggcaagacactccacgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaa |
7969920 |
T |
|
| Q |
299 |
caaaagctttgtatctaaggaacaaaagtcctatgacactccacaagagacacccttcaaggtttgaatttgatgtcc |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7969921 |
caaaagctttgtatctaaggaacaaaagtcctatgacactccacaagagacacccttcaaggtttgaatttgaagtcc |
7969998 |
T |
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