View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_78 (Length: 357)

Name: NF8971_low_78
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_78
NF8971_low_78
[»] chr6 (7 HSPs)
chr6 (195-341)||(12800106-12800256)
chr6 (195-289)||(12770774-12770868)
chr6 (213-341)||(12777047-12777179)
chr6 (195-269)||(24977772-24977846)
chr6 (195-269)||(24976341-24976415)
chr6 (196-273)||(12766760-12766837)
chr6 (196-270)||(3894855-3894929)
[»] chr1 (7 HSPs)
chr1 (17-135)||(4449389-4449508)
chr1 (195-269)||(9826456-9826530)
chr1 (195-269)||(31279279-31279353)
chr1 (196-269)||(4449635-4449708)
chr1 (195-268)||(9812060-9812133)
chr1 (132-185)||(4449553-4449606)
chr1 (195-269)||(9751437-9751510)
[»] chr5 (1 HSPs)
chr5 (195-269)||(40235004-40235078)
[»] chr4 (2 HSPs)
chr4 (195-269)||(39936153-39936227)
chr4 (195-268)||(28745642-28745715)
[»] chr3 (7 HSPs)
chr3 (195-273)||(20204887-20204965)
chr3 (196-269)||(16724876-16724949)
chr3 (196-269)||(18177746-18177819)
chr3 (195-267)||(24835072-24835144)
chr3 (195-267)||(22261736-22261808)
chr3 (195-267)||(22266691-22266763)
chr3 (196-263)||(35269852-35269919)
[»] chr2 (3 HSPs)
chr2 (195-269)||(43822042-43822116)
chr2 (195-269)||(44909797-44909871)
chr2 (195-268)||(14106067-14106140)
[»] scaffold0432 (1 HSPs)
scaffold0432 (195-269)||(5822-5896)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 12800106 - 12800256
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgttaattaaattatgcaatcttga 294  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  12800106 ttattagagcctggtttcgatccagggacctgtaggttatgggcccaccacgcttccgccgcaccactctgattttgttaattaaattatgcaatcttga 12800205  T
Q  295 ttaatgatctgatatacatctttgc----taacctaactcattcataaatc 341  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||    
T  12800206 ttaatgatctgatatacatctttgcttattaacctaactcattcataaatc 12800256  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 12770774 - 12770868
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgttaattaaattatgcaat 289  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  12770774 ttatcagagcctggtttcaatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatcttgttgattaaattatacaat 12770868  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 12777047 - 12777179
Alignment:
Q  213 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgttaattaaattatgcaatcttgattaatgatctgatataca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| ||||||| || | ||||    
T  12777047 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatgttgttgattgaattatgcaattttgactaatgatatgctttaca 12777146  T
Q  313 tctttgc----taacctaactcattcataaatc 341  Q
    ||||| |    ||||||||||||||||| ||||    
T  12777147 tctttccttaataacctaactcattcatgaatc 12777179  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 24977772 - 24977846
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977772 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24977846  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 24976341 - 24976415
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24976341 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24976415  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 12766760 - 12766837
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgtt 273  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  12766760 tatcagagcctggtttcgatccagggacctatgggttatgggcccaccatgcttccgctgcgccactctgatcttgtt 12766837  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 3894855 - 3894929
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttt 270  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3894855 tatcagagtctggtttctatccaaggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttt 3894929  T

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Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 4449389 - 4449508
Alignment:
Q  17 actattcaaccattactgagataa-gtttcaatgacatagaagaatatgtgatgctacaagaaaactcttgcaaagataataaagactttcattatcttg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||    
T  4449389 actattcaaccattactgagataatgtttcaatgacatagaagaatatgtgatgctacaagaaaactcttgcaaagagaataaagaatttcattattttg 4449488  T
Q  116 aagtcattctatactttttg 135  Q
    ||| ||||||||||||||||    
T  4449489 aagccattctatactttttg 4449508  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 9826456 - 9826530
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826456 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 9826530  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 31279279 - 31279353
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279279 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 31279353  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 4449635 - 4449708
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449635 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 4449708  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 9812060 - 9812133
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 268  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9812060 ttatcagagcctggttttaatccagggacctatgggttatgggcccaccacgcttccgctgcgccactctgatt 9812133  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 4449553 - 4449606
Alignment:
Q  132 tttggtgcataagtatgtccgaaatgagacgcgataattgtttgccgtttaata 185  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  4449553 tttggtgcataagtttgtccgaaatgagacgcgataattgtttgccgttcaata 4449606  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 9751437 - 9751510
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||| |||| ||| |||||||||||||| ||||| ||||| | |||||||||||||| |||||||||||| ||||    
T  9751437 ttattagagtctgatttcgatccagggatctgtgagttatagacccaccacgcttcc-ctgcgccactctaattt 9751510  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 40235004 - 40235078
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235004 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 40235078  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 39936227 - 39936153
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936227 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 39936153  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 28745642 - 28745715
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745642 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 28745715  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 20204965 - 20204887
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgtt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20204965 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatattgtt 20204887  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 16724876 - 16724949
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724876 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 16724949  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 18177746 - 18177819
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177746 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 18177819  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 24835072 - 24835144
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835072 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 24835144  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 22261808 - 22261736
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 267  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22261808 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22261736  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 22266691 - 22266763
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 267  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22266691 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22266763  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 35269852 - 35269919
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35269852 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgtgccactc 35269919  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 43822116 - 43822042
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822116 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 43822042  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 44909871 - 44909797
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909871 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 44909797  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 14106067 - 14106140
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106067 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 14106140  T

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Target: scaffold0432 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 5822 - 5896
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 269  Q
    |||| ||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||    
T  5822 ttattagagcctagtttcgatccaggaacctatgggttatggacccaccacgcttccgctgcgtcactctgattt 5896  T

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