View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_84 (Length: 350)
Name: NF8971_low_84
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_84 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 34473898 - 34473582
Alignment:
| Q |
18 |
aataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473898 |
aataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatg |
34473799 |
T |
|
| Q |
118 |
ctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473798 |
ctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaatta |
34473699 |
T |
|
| Q |
218 |
tgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatcccaacttattcaattc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473698 |
tgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatcccaacttattcaattc |
34473599 |
T |
|
| Q |
318 |
agccacttctctgatgt |
334 |
Q |
| |
|
||||||||||||||||| |
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| T |
34473598 |
agccacttctctgatgt |
34473582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 35 - 301
Target Start/End: Original strand, 34372706 - 34372972
Alignment:
| Q |
35 |
ctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgt |
134 |
Q |
| |
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|||||||||||| ||||||||| ||| |||| |||||||||||||||||||| || |||| ||||||||||||| | | ||||||||| ||||||| |
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| T |
34372706 |
ctcagacgttactgatgcaaatgatattctcattcgaaaaaggtatgatcctgcttttggataatttataaatatcaattgtactcatgagtgaaaatgt |
34372805 |
T |
|
| Q |
135 |
ctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgtta |
234 |
Q |
| |
|
||||||||| |||| |||||||||| | |||| |||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34372806 |
ctatctgaaattaagatcattgtaaattattcattgttctctacatttaataaaaatattgcttcttgtggtatggaaaattatgcacctgatggtgtta |
34372905 |
T |
|
| Q |
235 |
tcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
34372906 |
ccatggatttccaaattattgtactttacagtacatttctcagttatctgcggatctacaggatatc |
34372972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 35 - 301
Target Start/End: Complemental strand, 34467876 - 34467610
Alignment:
| Q |
35 |
ctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgt |
134 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||| ||| ||||||||||| | || ||||||||||||||||||| |||||||||||| |||||| |
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| T |
34467876 |
ctcagacgataccgttgcaaaaggcatttccattggagaaaagtatgatcctgttcttggatatgttataaatatcaactatgctcatgagggaaaatgc |
34467777 |
T |
|
| Q |
135 |
ctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgtta |
234 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||| |||| |||||||| | ||||||||||| |||||||||| |||||||| || |||| ||||||||| |
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| T |
34467776 |
ctatctgaatttaatatcgttgttactcattcattgttctctacatttaataaaaatattgtttcttgtggtatggaaaatcatatacctaatggtgtta |
34467677 |
T |
|
| Q |
235 |
tcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |||||||||||| ||| ||| |||||||| |||||| |
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| T |
34467676 |
ccatagatttccagattattgtactttatattacatttctcaactatttgtggatctacatgatatc |
34467610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 27625951 - 27625781
Alignment:
| Q |
131 |
atgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggt |
230 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||| |
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|
| T |
27625951 |
atgtctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggt |
27625852 |
T |
|
| Q |
231 |
gttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
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| T |
27625851 |
gttaccatagatttccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc |
27625781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 34511724 - 34511554
Alignment:
| Q |
131 |
atgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggt |
230 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||| |
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|
| T |
34511724 |
atgtctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggt |
34511625 |
T |
|
| Q |
231 |
gttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
|
| || || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
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| T |
34511624 |
gctaccatagatttccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc |
34511554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 34477799 - 34477572
Alignment:
| Q |
58 |
gcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgt |
157 |
Q |
| |
|
||||||||| |||| ||||||||||||| | || ||||||||||||||||||| ||| || | |||| ||||| |||||||||| |||||| || ||| |
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|
| T |
34477799 |
gcatttccagcggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttctatctgaatttaataacagtgt |
34477700 |
T |
|
| Q |
158 |
aactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgta |
257 |
Q |
| |
|
||||| | |||||| | | ||||| |||||||||||||||| | |||||||||| ||| |||||||||| || |||||||||||||||| | |
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|
| T |
34477699 |
aactcatc--------tctacagttaataaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattgga |
34477608 |
T |
|
| Q |
258 |
ctttatagtacatttctcaattatctgtcgatctac |
293 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| |
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|
| T |
34477607 |
ctttttagtacatttctcaattatctgtggatctac |
34477572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 34376094 - 34376196
Alignment:
| Q |
59 |
catttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgta |
158 |
Q |
| |
|
||||||| |||||||||||||||| | || | || ||||| ||||||||||||| ||| ||||||||| ||||| ||||||| || |||||||||||||| |
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|
| T |
34376094 |
catttcccttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcatgagtgaaaatttctatcttaatttaatatcattgta |
34376193 |
T |
|
| Q |
159 |
act |
161 |
Q |
| |
|
||| |
|
|
| T |
34376194 |
act |
34376196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 34462733 - 34462643
Alignment:
| Q |
58 |
gcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaa |
148 |
Q |
| |
|
||||||||| ||||||||||||||| || | || ||||||||||||||||||| ||| |||| || ||||| |||||||||| |||| |
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|
| T |
34462733 |
gcatttccaacggaaaaaggtatgatgttgttcttggatatgttataaatatcaactatactcacgatagaaaatttctatctgaatttaa |
34462643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 35 - 301
Target Start/End: Complemental strand, 607 - 341
Alignment:
| Q |
35 |
ctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgt |
134 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||||||||||||||||||| ||||||| | |||||||||||| | | ||||||||| ||||| | |
|
|
| T |
607 |
ctcagacattaccgatgcaaatgacattcccattggaaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatat |
508 |
T |
|
| Q |
135 |
ctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgtta |
234 |
Q |
| |
|
||||||||||||||||| |||||||||| | || |||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
507 |
ctatctgaagttaatattattgtaactcatccattgttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgata |
408 |
T |
|
| Q |
235 |
tcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
|
|| |||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
407 |
ccatagatttccaaattattgtactttacaatacatttctcagttatctgcagatctacaagatatc |
341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 35 - 301
Target Start/End: Complemental strand, 10526613 - 10526347
Alignment:
| Q |
35 |
ctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgt |
134 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||||||||||||||||||| ||||||| | |||||||||||| | | ||||||||| ||||| | |
|
|
| T |
10526613 |
ctcagacattaccgatgcaaatgacattcccattggaaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatat |
10526514 |
T |
|
| Q |
135 |
ctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgtta |
234 |
Q |
| |
|
||||||||||||||||| |||||||||| | || |||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
10526513 |
ctatctgaagttaatattattgtaactcatccattgttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgata |
10526414 |
T |
|
| Q |
235 |
tcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
|
|| |||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
10526413 |
ccatagatttccaaattattgtactttacaatacatttctcagttatctgcagatctacaagatatc |
10526347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 10533438 - 10533169
Alignment:
| Q |
19 |
ataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgc |
118 |
Q |
| |
|
||||||||||| | ||||||| | | |||||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||||||| | | | |
|
|
| T |
10533438 |
ataccatcagtgatgcctcagacatcagcgatgcaaatgacattcccattggaaaaaggtatgatcctgcttttggataagttataaatatcaactgtac |
10533339 |
T |
|
| Q |
119 |
tcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattat |
218 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
10533338 |
tcacgagtgaaaatgtctatctgaagttaatatcattgtaac-------------tctgcatttaataaaaatattgcttcttgtggtatggaaaattag |
10533252 |
T |
|
| Q |
219 |
gcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
301 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
10533251 |
gcacctgatggcgttacgatagatttccaaattattgtactttacagtacatttctcggttatctgcggatctacaagatatc |
10533169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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