View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_93 (Length: 331)
Name: NF8971_low_93
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 4858974 - 4859274
Alignment:
| Q |
19 |
gttttgacaaaataaaggacaaatgtatgaaaaactaaagaagaaaaaattgaatacgtaagtattttcagcctagaaataaatgatacatttaaccaat |
118 |
Q |
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| T |
4858974 |
gttttaacaaaataaaggacaaatgtatgaaaaactaaagaagaaaaaattgaatacgtaagtattttcagcctcgaaataaatgatacatttaaccaat |
4859073 |
T |
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| Q |
119 |
ttgnnnnnnnagatcaatacatttaaccaagttttgaaaagtactgttctggttttaaaatactggagaaccttcgatgaccaaatgtgcaaatcctatg |
218 |
Q |
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| T |
4859074 |
ttgtttttttagatcaatacatttaaccaagttttgaaaagtactgttctggttttaaaatactggagaaccttcgatgaccaaatgtgcaaatcctatg |
4859173 |
T |
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| Q |
219 |
tacaaccgttgtaaagcatcaatcccaatccaaaataaatggtattaaaacagcagtaaagaaattagatgaatataaagaagttgtaaaaaacacaggt |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859174 |
tacaaccgttgtaaagcatcaatcccaatcaaaaataaatggtattaaaacagcagtaaagaaattagatgaatataaagaagttgtaaaaaacacaggt |
4859273 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
4859274 |
t |
4859274 |
T |
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