View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_95 (Length: 326)

Name: NF8971_low_95
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_95
NF8971_low_95
[»] chr5 (3 HSPs)
chr5 (11-308)||(42261372-42261669)
chr5 (101-150)||(42777155-42777204)
chr5 (128-192)||(37512020-37512084)
[»] chr4 (1 HSPs)
chr4 (121-247)||(42448872-42448998)
[»] chr2 (2 HSPs)
chr2 (103-190)||(29353303-29353390)
chr2 (114-187)||(44919370-44919443)
[»] chr1 (3 HSPs)
chr1 (82-141)||(40399710-40399769)
chr1 (94-192)||(367933-368031)
chr1 (103-190)||(51869132-51869219)
[»] chr8 (2 HSPs)
chr8 (112-178)||(31135859-31135925)
chr8 (113-190)||(4027038-4027115)
[»] chr7 (3 HSPs)
chr7 (113-190)||(30249009-30249086)
chr7 (121-214)||(5441502-5441595)
chr7 (121-214)||(5450512-5450605)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 42261669 - 42261372
Alignment:
Q  11 gataatacttaaaaggcagtttatgtaagatgagaaatgtatcatcataatcagaatgatcattacataaaatattgttgcagtacatcttaatgaaatt 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261669 gataataattaaaaggcagtttatgtaagatgagaaatgtatcatcataatcagaatgatcattacataaaatattgttgcagtacatcttaatgaaatt 42261570  T
Q  111 ggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261569 ggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatga 42261470  T
Q  211 ggtaaattgatccaaaccttttcgtcaatgacagcaatagccagtgaattgtccatctccagctttgagggtgattaagaggagaaagatgtagtgca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261469 ggtaaattgatccaaaccttttcgtcaatgacagcaatagccagtgaattgtccatctccagctttgagggtgattaagaggagaaagatgtagtgca 42261372  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 42777204 - 42777155
Alignment:
Q  101 taatgaaattggggttttcgaataagagagaccatgatttgcatacacat 150  Q
    |||||||||| ||||| || ||||||||||||||||||||||| ||||||    
T  42777204 taatgaaattagggttatcaaataagagagaccatgatttgcacacacat 42777155  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 37512084 - 37512020
Alignment:
Q  128 gagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatg 192  Q
    |||||||||||||||||||| ||  ||| || ||||| ||||| | |||||||||||| ||||||    
T  37512084 gagaccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatg 37512020  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 42448998 - 42448872
Alignment:
Q  121 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggtaaattga 220  Q
    |||||||||||||||  ||||||||| |||  ||| | ||||||||||||||| || ||||||||||||||||||||||| | |||||||||||||| |     
T  42448998 aataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaatgaagagcactatatcatgaggtaaatagt 42448899  T
Q  221 tccaaaccttttcgtcaatgacagcaa 247  Q
    | ||||||||||||| | |||||||||    
T  42448898 tgcaaaccttttcgttagtgacagcaa 42448872  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 29353303 - 29353390
Alignment:
Q  103 atgaaattggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 190  Q
    |||||||| |||||||| |||||||||||||||| |||   ||| |||  ||| |||||||| ||||||||||| |||||||||||||    
T  29353303 atgaaattagggttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattttaaaggaagttttgacaaaa 29353390  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 44919370 - 44919443
Alignment:
Q  114 gttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgaca 187  Q
    |||||| |||||||||| ||||||||| | |||||||  |||  |||| || ||||||||||| ||||||||||    
T  44919370 gttttcaaataagagagcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgaca 44919443  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 40399710 - 40399769
Alignment:
Q  82 atattgttgcagtacatcttaatgaaattggggttttcgaataagagagaccatgatttg 141  Q
    |||||||||| |||||| || |||||||| |||||||||||||| |||| ||||||||||    
T  40399710 atattgttgcggtacatgttcatgaaattagggttttcgaataaaagagtccatgatttg 40399769  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 368031 - 367933
Alignment:
Q  94 tacatcttaatgaaattggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatg 192  Q
    ||||| || |||||||| ||||| || ||||||||   ||||||||||| ||||||| |||| ||  |||| ||||||| |||||||||||||| ||||    
T  368031 tacatgttcatgaaattagggttatcaaataagagtacccatgatttgcgtacacatttaaatcgagtcaaagattttagaggcagttttgacataatg 367933  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 51869219 - 51869132
Alignment:
Q  103 atgaaattggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 190  Q
    |||||||  |||| ||| |||||||||||||||| |||| || |||||  ||| || ||||| |||||||| || |||||||||||||    
T  51869219 atgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattttaacggaagttttgacaaaa 51869132  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 31135859 - 31135925
Alignment:
Q  112 gggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggca 178  Q
    |||||||| ||||| |||||||||| |||||||||||||  ||| ||||||||  ||||||||||||    
T  31135859 gggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggca 31135925  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 4027115 - 4027038
Alignment:
Q  113 ggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 190  Q
    ||||||| |||||||||||||||| ||||  |||||||  ||| || ||||| ||||||||||| ||||| |||||||    
T  4027115 ggttttcaaataagagagaccatggtttgtgtacacatccaaaacgtttcaaagattttaaaggaagtttcgacaaaa 4027038  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 30249086 - 30249009
Alignment:
Q  113 ggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 190  Q
    ||||||| |||||||||||||||| ||||  | |||||  ||| ||||| || ||||||||||| |||||||||||||    
T  30249086 ggttttcaaataagagagaccatgttttgtgtgcacattcaaaacgctttaaagattttaaaggaagttttgacaaaa 30249009  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 5441595 - 5441502
Alignment:
Q  121 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggta 214  Q
    ||||||| |||||| ||||||| ||| |||  ||| || ||||||||||| | ||||| ||||||||||||  |||  |||||||||| |||||    
T  5441595 aataagatagaccacgatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggta 5441502  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 5450605 - 5450512
Alignment:
Q  121 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggta 214  Q
    ||||||| |||||| ||||||| ||| |||  ||| || ||||||||||| | ||||| ||||||||||||  |||  |||||||||| |||||    
T  5450605 aataagatagaccacgatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggta 5450512  T

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