View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8971_low_96 (Length: 324)

Name: NF8971_low_96
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8971_low_96
NF8971_low_96
[»] chr2 (1 HSPs)
chr2 (17-310)||(8933011-8933304)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 8933011 - 8933304
Alignment:
17 agcacagatgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatcacta 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8933011 agcacacatgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatcacta 8933110  T
117 gtcacagtttcttcaagcgcatccgaacaaaactcggttccaagatcatgaaaatcaatatatttatctgttccaacacgtgaccgaaataactgagcga 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8933111 gtcacagtttcttcaagcgcatctgaacaaaactcggttccaagatcatgaaaatcaatatatttatctgttccaacacgtgaccgaaataactgagcga 8933210  T
217 attcgtatagccaatcatcaatctctagattctctactactttattgcattcaatacacattttctcatccaagacacaatctagaggtttctg 310  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
8933211 attcgtataaccaatcatcaatctctagattctctactactttattgcattcagtacacattttctcatccaagacacaatctagaggtttctg 8933304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University