View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_96 (Length: 324)
Name: NF8971_low_96
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 8933011 - 8933304
Alignment:
| Q |
17 |
agcacagatgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatcacta |
116 |
Q |
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| T |
8933011 |
agcacacatgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatcacta |
8933110 |
T |
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| Q |
117 |
gtcacagtttcttcaagcgcatccgaacaaaactcggttccaagatcatgaaaatcaatatatttatctgttccaacacgtgaccgaaataactgagcga |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8933111 |
gtcacagtttcttcaagcgcatctgaacaaaactcggttccaagatcatgaaaatcaatatatttatctgttccaacacgtgaccgaaataactgagcga |
8933210 |
T |
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| Q |
217 |
attcgtatagccaatcatcaatctctagattctctactactttattgcattcaatacacattttctcatccaagacacaatctagaggtttctg |
310 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8933211 |
attcgtataaccaatcatcaatctctagattctctactactttattgcattcagtacacattttctcatccaagacacaatctagaggtttctg |
8933304 |
T |
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