View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8972_high_16 (Length: 205)
Name: NF8972_high_16
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 2620280 - 2620111
Alignment:
| Q |
23 |
agctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgactt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2620280 |
agctttagcagcatccacaatttcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactt |
2620181 |
T |
|
| Q |
123 |
actaaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2620180 |
actaaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2620111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 2433005 - 2432836
Alignment:
| Q |
23 |
agctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgactt |
122 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2433005 |
agctttggcagcatccacaatttcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactt |
2432906 |
T |
|
| Q |
123 |
actaaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2432905 |
actaaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2432836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 2572468 - 2572637
Alignment:
| Q |
23 |
agctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgactt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2572468 |
agctttagcagcatccacaatttcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactc |
2572567 |
T |
|
| Q |
123 |
actaaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2572568 |
actaaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2572637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 2600049 - 2600215
Alignment:
| Q |
26 |
tttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttact |
125 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2600049 |
tttagcagcattcacaatttcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttact |
2600148 |
T |
|
| Q |
126 |
aaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2600149 |
aaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2600215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 2448872 - 2448703
Alignment:
| Q |
23 |
agctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgactt |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2448872 |
agctttagcagcatccacaacatcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactt |
2448773 |
T |
|
| Q |
123 |
actaaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2448772 |
actaaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2448703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 2677304 - 2677473
Alignment:
| Q |
23 |
agctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgactt |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2677304 |
agctttagcagcatccacgatttcttcatatgtagcatcctctcttccaaaaagtatattctccataatgcttgttgcaaacaaagcaggttcttgactt |
2677403 |
T |
|
| Q |
123 |
actaaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2677404 |
actaaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2677473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 2644868 - 2645035
Alignment:
| Q |
25 |
ctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttac |
124 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2644868 |
ctttagcagcatctacaacatcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttac |
2644967 |
T |
|
| Q |
125 |
taaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2644968 |
taaacccatttgagacctaagccactgaagttgcaacttatgaatggcaactccatcaagaagaatct |
2645035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 2586590 - 2586421
Alignment:
| Q |
23 |
agctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgactt |
122 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
2586590 |
agctttagcagcatccacaacatcttcaaatgtagcatcctctcttccaaaaagtatattctccttgatgcttgttgcaaacaaagcaggttcttgactc |
2586491 |
T |
|
| Q |
123 |
actaaacccatttgagacctaagccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2586490 |
actaaacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2586421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 17872688 - 17872804
Alignment:
| Q |
69 |
ccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgaaacttatgaa |
168 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||| ||||||||||| |||| || || ||| ||| |
|
|
| T |
17872688 |
ccaaaaattatattctctttaatgcttgttgcaaataaagcaggttcttgactaaccaaccccatcattgacctaagccatttaatctgcaagttacgaa |
17872787 |
T |
|
| Q |
169 |
tagcaactccatcaaga |
185 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
17872788 |
tagctactccatcaaga |
17872804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University