View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8972_high_2 (Length: 615)
Name: NF8972_high_2
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Original strand, 39732292 - 39732809
Alignment:
| Q |
13 |
ggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatg |
112 |
Q |
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| T |
39732292 |
ggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatg |
39732391 |
T |
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| Q |
113 |
tgggcttattttggtatatggttcatgaacttcaaaatcatattcacaaactcaagacatatacaccaatcatgttcatgtacttctttagccattctac |
212 |
Q |
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| T |
39732392 |
tgggcttattttggtatatggttcatgaacttcaaaatcatattcacaaactcatgacatatacaccaatcatgttcatgtacttctttagccattctac |
39732491 |
T |
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| Q |
213 |
attgctggactaagcatctgcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcat |
312 |
Q |
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| T |
39732492 |
attgctggactaaacatctgcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcat |
39732591 |
T |
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| Q |
313 |
ttatttttatcaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaa |
412 |
Q |
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| T |
39732592 |
ttatttttatgaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaa |
39732691 |
T |
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| Q |
413 |
ttgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccccgaatctattcatgatgtttat |
512 |
Q |
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| T |
39732692 |
ttgaaagattttcttggaggaacgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccccgaatctattcatgatgtttat |
39732791 |
T |
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| Q |
513 |
ctttctatttcagttgac |
530 |
Q |
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| T |
39732792 |
ctttctatttcagttgac |
39732809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 39732840 - 39732913
Alignment:
| Q |
526 |
ttgacccatgtagattctatctattggaggaagtgattttgttgtagttgttacattagttcctgtgtgtattt |
599 |
Q |
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| T |
39732840 |
ttgagccatgtagattctatctattggaggaactgattttgttgtagttgttacattagttcctgtgtgtattt |
39732913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 486
Target Start/End: Complemental strand, 37477029 - 37476844
Alignment:
| Q |
295 |
cttaattgctcttttcatttatttttatcaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccat |
394 |
Q |
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| T |
37477029 |
cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgg------agcctgtcgaggatccttcaccat |
37476936 |
T |
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| Q |
395 |
ttaaattcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
486 |
Q |
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| T |
37476935 |
caagattcacatggagaattgacaacttttctagggtgaatttgaaaaagctctattcagatgtatttgttgttgggagttacaaatggtat |
37476844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 39901618 - 39901566
Alignment:
| Q |
541 |
tctatctattggaggaagtgattttgttgtagttgttacattagttcctgtgt |
593 |
Q |
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| T |
39901618 |
tctatctattgtaggaagtgattttgttgtagttgttattttagttcctgtgt |
39901566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 39868313 - 39868226
Alignment:
| Q |
399 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
486 |
Q |
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| T |
39868313 |
attcacatggagaattgggggattttcttcgataaatacaataaagctctattcagatgtatttgaagttgggggttacaaatggtat |
39868226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 39901787 - 39901700
Alignment:
| Q |
399 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
486 |
Q |
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| T |
39901787 |
attcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtat |
39901700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 39868122 - 39868064
Alignment:
| Q |
541 |
tctatctattggaggaagtgattttgttgtagttgttacattagttcctgtgtgtattt |
599 |
Q |
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|||||||| ||| |||||| |||||||||||| ||||| |||||||||| ||||||||| |
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| T |
39868122 |
tctatctagtggcggaagtcattttgttgtagctgttatattagttcctatgtgtattt |
39868064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 39913702 - 39913661
Alignment:
| Q |
445 |
ctctgttcagatgtatttgatgttgggggctataaatggtat |
486 |
Q |
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| T |
39913702 |
ctctattcagatgtatttgaagctgggggctataaatggtat |
39913661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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