View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8972_high_9 (Length: 312)

Name: NF8972_high_9
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8972_high_9
NF8972_high_9
[»] chr5 (1 HSPs)
chr5 (17-312)||(3171214-3171509)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 3171509 - 3171214
Alignment:
Q  17 aatgaggaattataaacgggaaatgaggttggcatagaaactcactgatgaagaagtaagggaggtgttggaagcaatattattaggcgcggataaggag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3171509 aatgaggaattataaacgggaaatgaggttggcatagaaactcactgatgaagaagtaagggaggtgttggaagcaatattattaggcgcggataaggag 3171410  T
Q  117 aaccggtacggaggagtagatacgctgctgactgccacggttgagttgagagggaaacagaaatatctgagggcggcagggcgcctttgatttcgttcgt 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3171409 aaccggtacagaggagtagatacgctgctgactgccacggttgagttgagagggaaacagaaatatctgagggcggcagggcgcctttgatttcgttcgt 3171310  T
Q  217 gtttaggagatttgagtgatttacacgtcatacacgtatcaaagctcctacaaaaaattacatttagtcatcaaattatcggctcctcttatattt 312  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  3171309 gtttagaagatttgagtgatttacacgtcatacacgtatcaaagctcctgcaaaaaattacatttagtcatcaaattatcggctcctcttagattt 3171214  T

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