View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8972_low_11 (Length: 457)
Name: NF8972_low_11
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_11 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 39576124 - 39575691
Alignment:
| Q |
9 |
tggtgttcgaggaggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39576124 |
tggtgttcgaggaggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtgggggaaccgttgat |
39576025 |
T |
|
| Q |
109 |
agaggaactgatactttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |
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| T |
39576024 |
agaggaactgatactttatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccac |
39575925 |
T |
|
| Q |
209 |
gcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagtag |
308 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
39575924 |
gcactgcaaatgatacgtctgatggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctagcag |
39575825 |
T |
|
| Q |
309 |
cataagttggagtgttcctgtagagaagaacgtagatcatttacttaggtttcatttctgtgacgtttttagtaatcgacagtctggtctgacagatttc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
39575824 |
cataagttggagtgttcctgtagagaagaacgtagatcattttcttaggtttcatttttgtgacgttttcagtaatcgacaatctggtcttacagatttc |
39575725 |
T |
|
| Q |
409 |
cttctcttaatttatgacacttatgttgtgaatg |
442 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
39575724 |
cttctcttaatttatgacaattatgttgtgaatg |
39575691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 442
Target Start/End: Complemental strand, 39521469 - 39521049
Alignment:
| Q |
22 |
ggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgatagaggaactgata |
121 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| | |||||||| |||| ||| ||||||| |||| ||| || ||||||||||| |||| |
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|
| T |
39521469 |
ggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgata |
39521370 |
T |
|
| Q |
122 |
ctttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatga |
221 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||| || | ||||||||||||||||||||| |
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|
| T |
39521369 |
cattatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatga |
39521270 |
T |
|
| Q |
222 |
tacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagtagcataagttggagt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
39521269 |
tacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcaacataagttggagt |
39521170 |
T |
|
| Q |
322 |
gttcctgtagagaagaacgtagatcatttacttaggtttcatttctgtgacgtttttagtaatcgacagtctggtctgacagatttccttctcttaattt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39521169 |
gttcctgtagagaagaacgtagatcatttacttaggtttcatttctgtgacgtttttagtaatcgacagtctggtctgacagatttccttctcttaattt |
39521070 |
T |
|
| Q |
422 |
atgacacttatgttgtgaatg |
442 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
39521069 |
atgacacttatgttgtgaatg |
39521049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 83 - 435
Target Start/End: Complemental strand, 39524908 - 39524550
Alignment:
| Q |
83 |
ttaacgttggtgggggaaccgttgatagaggaactgatactttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaa |
182 |
Q |
| |
|
|||| |||||||| |||| ||| |||||| ||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||| |||||||||||||| |
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|
| T |
39524908 |
ttaatgttggtggcggaattgttaatagagaaactgatacactatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaa |
39524809 |
T |
|
| Q |
183 |
tcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggc |
282 |
Q |
| |
|
| | ||||| |||| |||| |||||||||||||||| ||||| || | ||||||||||| |||| || | |||||| | |||||| |||||| | |
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|
| T |
39524808 |
tggttcctttgaaggtgatattaaacgcactgcaaatgatgaatctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgcc |
39524709 |
T |
|
| Q |
283 |
aaagagagtattaacggttcta---gt---agcataagttggagtgttcctgtagagaagaacgtagatcatttacttaggtttcatttctgtgacgttt |
376 |
Q |
| |
|
|||| |||| |||| ||||| | || | ||||||||||||||||||||| |||||||| |||||||||| |||| | ||||||| |||||| ||| |
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|
| T |
39524708 |
aaagtgagtgttaatggttcaatcggtttaaacataagttggagtgttcctgtggagaagaatatagatcatttccttatgcttcatttttgtgacattt |
39524609 |
T |
|
| Q |
377 |
ttagtaatcgacagtctggtctgacagatttccttctcttaatttatgacacttatgtt |
435 |
Q |
| |
|
||||| ||| |||| ||||||| ||| |||| ||||||| ||||||||| ||||||| |
|
|
| T |
39524608 |
ttagtgatcaacagactggtcttacaactttcattctcttcgtttatgacagttatgtt |
39524550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 83 - 379
Target Start/End: Complemental strand, 39544204 - 39543902
Alignment:
| Q |
83 |
ttaacgttggtgggggaaccgttgatagaggaactgatactttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaa |
182 |
Q |
| |
|
|||| |||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
39544204 |
ttaatgttggtagcggaactgtcgatagaaaaaccgatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaa |
39544105 |
T |
|
| Q |
183 |
tcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggc |
282 |
Q |
| |
|
| | ||||| | || ||| ||||||||||||| |||||| ||| ||||||||||||||| |||||||||||| ||| |||||| |||||| | |
|
|
| T |
39544104 |
tggttcctttgcagatgaaattaaacgcactgcaaataatacatatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgcc |
39544005 |
T |
|
| Q |
283 |
aaagagagtattaacggttcta---gt---agcataagttggagtgttcctgtagagaagaacgtagatcatttacttaggtttcatttctgtgacgttt |
376 |
Q |
| |
|
|||||||| | | |||||||| || | ||||||||||||||||||||| || |||| | |||||||| |||||| |||||||||||||| ||| |
|
|
| T |
39544004 |
aaagagagcaaaagcggttctaaaggtttaaacataagttggagtgttcctgttgaaaagagtattgatcatttccttaggcttcatttctgtgacattt |
39543905 |
T |
|
| Q |
377 |
tta |
379 |
Q |
| |
|
||| |
|
|
| T |
39543904 |
tta |
39543902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 437
Target Start/End: Complemental strand, 39511224 - 39510805
Alignment:
| Q |
21 |
aggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgatagaggaactgat |
120 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||| ||||||| || || | | || ||||| | | ||| |
|
|
| T |
39511224 |
aggcttatctaattatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgtaggcggtgataatgtcactagagaagccgat |
39511125 |
T |
|
| Q |
121 |
actttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatg |
220 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||| || ||||||||| |||||| || |||| | | |||||| || |||| || | ||||||||| |
|
|
| T |
39511124 |
acattatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttgg---tgatattaaacacgctgcaaatg |
39511028 |
T |
|
| Q |
221 |
atacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttcta---gt---agcataag |
314 |
Q |
| |
|
|| |||||||||||||||||||| | |||||||| |||||| | |||||| |||||||| |||||||| |||||||| | || | |||||| |
|
|
| T |
39511027 |
atgaatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagtgcaaacggttcaaaaggtttaaacataag |
39510928 |
T |
|
| Q |
315 |
ttggagtgttcctgtagagaagaacgtagatcatttacttaggtttcatttctgtgacgtttttagtaatcgacagtctggtctgacagatttccttctc |
414 |
Q |
| |
|
||||||||||||||| | || | ||||||||||| || ||| |||||||||||||| |||||||| |||||||||||| ||| ||| |||| |||| |
|
|
| T |
39510927 |
ttggagtgttcctgtgcaaaaaactgtagatcatttcctcaggcttcatttctgtgacatttttagtgatcgacagtctgctcttacaactttcaatctc |
39510828 |
T |
|
| Q |
415 |
ttaatttatgacacttatgttgt |
437 |
Q |
| |
|
|| |||||||||| ||||||||| |
|
|
| T |
39510827 |
ttcatttatgacagttatgttgt |
39510805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 396
Target Start/End: Complemental strand, 39580543 - 39580277
Alignment:
| Q |
136 |
tggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtc |
235 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||| |||||||||||| |||||||| |||| |||| |||||||||| |||| ||||||||||| |
|
|
| T |
39580543 |
tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc |
39580444 |
T |
|
| Q |
236 |
caaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttcta---gt---agcataagttggagtgttcctgt |
329 |
Q |
| |
|
||||||||||| | |||||| ||||||| ||||| ||| || ||||||||||| || ||||| | || | ||||||||||||||||||||| |
|
|
| T |
39580443 |
caaattcaaatatacatattggtccagacgctctttataaaagtgccaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgt |
39580344 |
T |
|
| Q |
330 |
agagaagaacgtagatcatttacttaggtttcatttctgtgacgtttttagtaatcgacagtctggt |
396 |
Q |
| |
|
|| ||||| | ||||||| || ||| ||||||| |||||| |||||| | ||||||| |||||| |
|
|
| T |
39580343 |
ggaaaagaatattgatcattacctcaggcttcatttatgtgacatttttaatgatcgacaatctggt |
39580277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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