View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8972_low_13 (Length: 452)
Name: NF8972_low_13
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_13 |
 | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 41418130 - 41417778
Alignment:
| Q |
16 |
cacctttgtgctggctaaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |
|
|
| T |
41418130 |
cacctttgtgctggctaaaactgtatctatctctcctatgtgttctgttgccgtaggagaagctttagacttattccacgccttacaatggctaagtaac |
41418031 |
T |
|
| Q |
116 |
atgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgattt |
215 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
41418030 |
atgcaatctgacaacgtcgatttcatcttagattcaaagattacaacaaatgcctttaaccatcgtcgaattgatgttacaaaatttagccaagtgattt |
41417931 |
T |
|
| Q |
216 |
cagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggtta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41417930 |
cagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacaggagacaagcaaatgaggtagctcacactcttgctggggtta |
41417831 |
T |
|
| Q |
316 |
tcacattatcaactagtccttatatttattatcatttacctcgttgtataaac |
368 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41417830 |
tcacattatcagctagtccctatatttattatcatttacctcgttgtataaac |
41417778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 86 - 393
Target Start/End: Original strand, 26131687 - 26131993
Alignment:
| Q |
86 |
ttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaa |
185 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| || ||||| || |||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
26131687 |
ttattccacgccttacgatggctaagtgacatgcaatttgatgacgtcgatgtcgtcttggattcaaagattacaatagacgccttccaccatcgtcagg |
26131786 |
T |
|
| Q |
186 |
ttgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaa |
285 |
Q |
| |
|
|||||||||| |||||||| || || |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||| | |||||| || |
|
|
| T |
26131787 |
ttgatgttacggaatttggacaggtaatttcagcatgccagagtcttttcaacacatacttctcaaactctaaggtcgag-ttcaacaggcgacaaggaa |
26131885 |
T |
|
| Q |
286 |
atgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatga |
385 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||| | ||||||| ||||||||||| | ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
26131886 |
atgaggtagctcacacccttgctggggttgccgcattaaccgctagtcccactatttattatcgtgtacctcgttgtattaactcacttattattaatga |
26131985 |
T |
|
| Q |
386 |
aatactat |
393 |
Q |
| |
|
||| |||| |
|
|
| T |
26131986 |
aatgctat |
26131993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 387
Target Start/End: Complemental strand, 43218329 - 43217988
Alignment:
| Q |
45 |
tctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcacctt |
144 |
Q |
| |
|
|||||||| | | |||||||| ||| |||||| | | || ||||||||||||||||||||| ||||||||||||||| |||| || ||||| || ||| |
|
|
| T |
43218329 |
tctctcctgtgtattctgttgtcgtgggagaaaccttgggtttattccacgccttacaatggttaagtgacatgcaatttgacgacgtcgatgtcgtctt |
43218230 |
T |
|
| Q |
145 |
ggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacac |
244 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
43218229 |
ggattcaaatattacaatagacgccttccatcatcgtcaggttgatgttacagaatttggacaagtaatttcagcatgccagagtcttttcaacacacac |
43218130 |
T |
|
| Q |
245 |
ttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttat |
344 |
Q |
| |
|
||||||||||||||||||||| || |||| | ||||||||||||||||||||||||| |||| |||| | ||||| | ||||||| | ||||| |
|
|
| T |
43218129 |
ttctcaaactctaaggtcgag-ttcaacaggcgacaagcaaatgaggtagctcacacccttgtcaaggttgccgcattaaccgctagtcccactttttat |
43218031 |
T |
|
| Q |
345 |
tatcatttacctcgttgtataaactctcttattattaatgaaa |
387 |
Q |
| |
|
|||| | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43218030 |
tatcgtgtacctcgttgtataaactcttttattattaatgaaa |
43217988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 388
Target Start/End: Original strand, 13173164 - 13173508
Alignment:
| Q |
45 |
tctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcacctt |
144 |
Q |
| |
|
|||||||||| |||| ||||| | | |||||| || ||||||||||| |||||| |||||| |||||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
13173164 |
tctctcctatgtgttttgttgtcatgggagaaactacgggcttattccatgccttaaaatggccaagtgacatgcaatttgagaacgtcgattttgcctt |
13173263 |
T |
|
| Q |
145 |
ggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacac |
244 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||| | ||||||||| ||| ||| | ||||||||||||||| | | ||| ||||| |||||| |
|
|
| T |
13173264 |
ggattcaaagattacaacagacgccttccaccatcatcgggtcgatgttacaaaatatggactagtgatttcagcatgtcgaattcttttcaatacacac |
13173363 |
T |
|
| Q |
245 |
ttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttat |
344 |
Q |
| |
|
||||||||||||||| ||| || |||| ||||| ||||||| |||||||||| ||| || |||| ||||||||| |||||||| |||||||| |
|
|
| T |
13173364 |
ttctcaaactctaagtatgag-ttcaacagacgacaaacaaatgaaatagctcacaccattgttgaggttgccacattatctgctagtcctaatatttat |
13173462 |
T |
|
| Q |
345 |
--tatcatttacctcgttgtataaactctcttattattaatgaaat |
388 |
Q |
| |
|
|||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13173463 |
tatatcgtgtttttcgttgtataaactctcttgttattaatgaaat |
13173508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 41344221 - 41344300
Alignment:
| Q |
251 |
aactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactag |
331 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||| ||||||||||||||||| | || |||||| |||||||| |||||| |
|
|
| T |
41344221 |
aactctaaggtagagttt-aaccggagacaagcgaatgaggtagctcacacgttagcgggggttgccacattattaactag |
41344300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 16653 - 16278
Alignment:
| Q |
17 |
acctttgtgctggctaaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgaca |
116 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| |||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16653 |
acctttatgcttgctaaaactgtatatatttctcctatgtgttcagttgtcgtaggagaagctctaggcttattccaatccttacaatggctaagtgaca |
16554 |
T |
|
| Q |
117 |
tgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttc |
216 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16553 |
tgcaatttgacaacgtcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttatccaagtgatttc |
16454 |
T |
|
| Q |
217 |
agcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttat |
316 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||| ||||||| ||||| |||| ||||||| |
|
|
| T |
16453 |
atcatgctagagtctcttcaacacaaacttctcaaactctaaggtcgag-tttaagaagagacaagcaaatcaggtagcacacacccttgttggggttgc |
16355 |
T |
|
| Q |
317 |
cacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16354 |
cacattatcaactagtcccaatatttattatcatgtacttcgttgtataaactctcttattattaatgaaatgctat |
16278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 34352 - 34726
Alignment:
| Q |
17 |
acctttgtgctggctaaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgaca |
116 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| ||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34352 |
acctttatgcttgctaaaactgtatatatttcttctatgtgttctgttgtcgtaggagaagctctaggcttattccaattcttacaatggctaagtgaca |
34451 |
T |
|
| Q |
117 |
tgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttc |
216 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
34452 |
tgcaatttgccaacgtcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatctagccaagtgatttc |
34551 |
T |
|
| Q |
217 |
agcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||| ||||| |||| ||||||| |
|
|
| T |
34552 |
agcatgccagagtctcttcaacacacacttctcaaactttaaggtcgag-tttaacaggagacaagcaaattaggtagcacacacccttgttggggtt-g |
34649 |
T |
|
| Q |
317 |
cacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34650 |
cacattatcaactagttctaatttttattatcatgtactacgttgtataaactctcttattattaatgaaatgctat |
34726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 44036684 - 44036309
Alignment:
| Q |
17 |
acctttgtgctggctaaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgaca |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44036684 |
acctttgtgccggctaaaactgtatctatctctcttatgtgttttgttgccgtaggagaagttctaggcttattccacgccttacaatggctaagtgact |
44036585 |
T |
|
| Q |
117 |
tgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttc |
216 |
Q |
| |
|
|||||| ||||| | | |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
44036584 |
tgcaatttgacatcggagctttcgccttggattcaaagattacaacatatgcctttaaccatcgtcagattgatgttatagaatttggccaagtgatttc |
44036485 |
T |
|
| Q |
217 |
agcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttat |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||| |||| |||| || |
|
|
| T |
44036484 |
agcatgccagagtctcttcatcacacacttctcaaactctaaggtcgag-tttaacatgaaataaacaaatgaggtagctcacacccttgatgggattgc |
44036386 |
T |
|
| Q |
317 |
cacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
|||||||||| || ||| |||||||||||| | | || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44036385 |
cacattatcagttaatcccaatatttattatcgtgtgtcttgttgtataaactttcttattattaatgaaatactat |
44036309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 79 - 388
Target Start/End: Original strand, 8790466 - 8790774
Alignment:
| Q |
79 |
tctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8790466 |
tctaggcttattccacgccttacaatggctaagtgacatacaatttgacaacgtcgatttcaccttggattcaaagattacaaaagatgcctttaaccac |
8790565 |
T |
|
| Q |
179 |
cgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgaga |
278 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||| |
|
|
| T |
8790566 |
cgtcgaattgatgtcacataatttggtcaaatgatatcagcatgccagagtctcttcaacacacatttctcaaattctaaggtcgag-tttaacaggaga |
8790664 |
T |
|
| Q |
279 |
caagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttatta |
378 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8790665 |
caagcaaatgaggtagctcacacccttgctgaggttgccacattatcagctagtcccaatatttattatcatatacctcgttgtataaactctcttatta |
8790764 |
T |
|
| Q |
379 |
ttaatgaaat |
388 |
Q |
| |
|
|||||||||| |
|
|
| T |
8790765 |
ttaatgaaat |
8790774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 45 - 388
Target Start/End: Complemental strand, 21418066 - 21417725
Alignment:
| Q |
45 |
tctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcacctt |
144 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||| |||||||| ||| |||||||||| ||| ||| || |||| ||| || |||||||| |||| |
|
|
| T |
21418066 |
tctctcctatttgttctgttgctgtgaaagaagttctgagcttattcaacgtcttacaatggttaaatgatatacaatttgataatgtcgatttcgcctt |
21417967 |
T |
|
| Q |
145 |
ggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacac |
244 |
Q |
| |
|
| |||||||||||||| || | || ||||||| | | || ||||||||||||||| |||| ||||||| | ||| | |||||||||||||||||| |
|
|
| T |
21417966 |
gaattcaaagattacaccaaacattttccaccatcgccaagtt-atgttacagaatttgaccaaatgatttcggtatgtcggagtctcttcaacacacat |
21417868 |
T |
|
| Q |
245 |
ttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttat |
344 |
Q |
| |
|
|||||||||| |||| | | ||| || ||| ||||| ||||| ||| || | ||| |||| | ||||| | ||||||| |||||| || ||| |||| |
|
|
| T |
21417867 |
ttctcaaactttaagtttaaatttaaa-atgcgacaaacaaataaggcagatgacatccttgttagggttgccgcattatccactagttctaataattat |
21417769 |
T |
|
| Q |
345 |
tatcatttacctcgttgtataaactctcttattattaatgaaat |
388 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21417768 |
tatcatatacctcgttgtataaactctcttattattaataaaat |
21417725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 582371 - 582334
Alignment:
| Q |
356 |
tcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
582371 |
tcgttgtataaactctcttattattaatgaaatgctat |
582334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 142 - 393
Target Start/End: Complemental strand, 37120672 - 37120421
Alignment:
| Q |
142 |
cttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacaca |
241 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
37120672 |
cttgaattcaaagattacagcagatgcctttaaccatcgtcggattgatgttacagaatttggccaagtgatttcagcatgtcagagtctctttaataca |
37120573 |
T |
|
| Q |
242 |
cacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatt |
341 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||| ||||| |
|
|
| T |
37120572 |
aacttctcaaactctaaggtcgag-tttaacaggagacaagcaaatgaggtagctcacacctatgttggggttgccacattatcatctagtcccaatatt |
37120474 |
T |
|
| Q |
342 |
tattatcatttacctc-gttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
37120473 |
tattatcatgtacctcggttgtataaactctcttattattactgaaatgctat |
37120421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 17119049 - 17119402
Alignment:
| Q |
17 |
acctttgtgctggctaaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgaca |
116 |
Q |
| |
|
|||||||| ||||| || || |||||| |||| ||||| |||||||||| || |||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
17119049 |
acctttgtactggccaataccgtatctctctcccctatgtgttctgttgttgtgggagaacctctgagcttattccaccccttacaatggctaagtgaca |
17119148 |
T |
|
| Q |
117 |
tgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttc |
216 |
Q |
| |
|
|||||| ||||||| ||||||| ||| |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
17119149 |
tgcaatttgacaacgtcgattttgtcttagattcaaagattacaacagacgccttccacaatcgtcaggttgatgttacagaatttggacaagtgatttc |
17119248 |
T |
|
| Q |
217 |
agcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttat |
316 |
Q |
| |
|
| |||| | |||||||||||| |||||||||||||||||||||||||| || |||| | ||||| |||||||||||| |||||||||||| |
|
|
| T |
17119249 |
aacatgtcggagtctcttcaattcacacttctcaaactctaaggtcgag-ttcaacaggcgacaatcaaatgaggtag--------cttgctggggttgc |
17119339 |
T |
|
| Q |
317 |
cacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattat |
379 |
Q |
| |
|
||||||||| |||||| ||| ||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
17119340 |
cacattatccgctagtcgcaatacttattattatgtacctcgttgtataaactctcttattat |
17119402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 186 - 388
Target Start/End: Complemental strand, 29687848 - 29687647
Alignment:
| Q |
186 |
ttgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaa |
285 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| || | ||||| ||| |
|
|
| T |
29687848 |
ttgatgttacggaatttggacaagtaatttcagcatgccaaagtcttttcaacacacacttctcaaactctaaggtcga-atttagcaagcgacaaacaa |
29687750 |
T |
|
| Q |
286 |
atgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatga |
385 |
Q |
| |
|
||||| |||||||||| |||||||||||| | ||||| | |||||| ||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
29687749 |
atgagatagctcacacccttgctggggttgccgcattaaccgttagtcccactatttattatcgtgtacctcgttgtataaactctcttattattaatga |
29687650 |
T |
|
| Q |
386 |
aat |
388 |
Q |
| |
|
||| |
|
|
| T |
29687649 |
aat |
29687647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 388
Target Start/End: Complemental strand, 43360936 - 43360738
Alignment:
| Q |
187 |
tgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaa |
286 |
Q |
| |
|
|||| ||||| ||||| | ||| ||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
43360936 |
tgatattacaaaatttagacaaatgatttcagcatgttagagtctcttcaacacat--ttcttaaactctaagatcgagttc-aacatgcgacaagcaaa |
43360840 |
T |
|
| Q |
287 |
tgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaa |
386 |
Q |
| |
|
| ||| | ||||||| ||||| ||||| | ||||||| |||||| |||||||||||||| || ||||||||| ||||||||||||||||||| || |
|
|
| T |
43360839 |
taaggcaactcacacctttgctagggttgccgcattatccggtagtcccaatatttattatcatgtatctcgttgtacaaactctcttattattaataaa |
43360740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 364
Target Start/End: Complemental strand, 5595192 - 5595078
Alignment:
| Q |
249 |
caaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatat-ttattat |
347 |
Q |
| |
|
|||||||||||||||||||| | | | |||||||||||||||||||||||||| | || || | | |||||||||| |||| || ||| | ||||||| |
|
|
| T |
5595192 |
caaactctaaggtcgagttt-agtaggcgacaagcaaatgaggtagctcacactttagcgggagctgccacattatcagctag-ccctatctcttattat |
5595095 |
T |
|
| Q |
348 |
catttacctcgttgtat |
364 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
5595094 |
catatacctcgttgtat |
5595078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 29687909 - 29687873
Alignment:
| Q |
86 |
ttattccacgccttacaatggctaagtgacatgcaat |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29687909 |
ttattccacgcctcacaatggctaagtgacatgcaat |
29687873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 37092259 - 37092292
Alignment:
| Q |
419 |
taaacaagaaggttagaagagagagtaaactaac |
452 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
37092259 |
taaacaagaaagttagaagagagagtaaactaac |
37092292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 368
Target Start/End: Complemental strand, 12217189 - 12216861
Alignment:
| Q |
29 |
gctaaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
12217189 |
gctaaaactgtatctatctctcctatgtgttatgttgcagtagaagaagctttagacttattccacgtcttacaatggctaagtgacatgcaat-----a |
12217095 |
T |
|
| Q |
129 |
acatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagag |
228 |
Q |
| |
|
|| | ||||||||||| ||| |||||||||| ||| |||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
12217094 |
acgttgatttcaccttaaatttgaagattacaatagacaccttccaccatcgtcgggttgatgttacaaaatttggtcaagtgatttcagcatgccaaag |
12216995 |
T |
|
| Q |
229 |
tctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaac |
328 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||||||| |||| ||||||||||| |||||||||| |||| ||||||| | |||||||| | |
|
|
| T |
12216994 |
tctcttcaacaca-----ctcaaactctaaggtcaag-tttaacaagagataagcaaatgagatagctcacacccttgttggggttgccgcattatcagc |
12216901 |
T |
|
| Q |
329 |
tagtccttatatttattatcatttacctcgttgtataaac |
368 |
Q |
| |
|
||||| |||| |||||| | ||||||||||||||||| |
|
|
| T |
12216900 |
tagtctcaatatctattattgtgtacctcgttgtataaac |
12216861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 86 - 393
Target Start/End: Complemental strand, 26264029 - 26263723
Alignment:
| Q |
86 |
ttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaa |
185 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| |||| ||||||| ||||| || |||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
26264029 |
ttattctacgccttacaatggctacgtgacatacaatttgacaacgtcgatgtcgtcttggattcaaagattacaatagacgccttccaccatcgtcagg |
26263930 |
T |
|
| Q |
186 |
ttgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaa |
285 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||| |
|
|
| T |
26263929 |
ttgatgttatagaatttggacaagtaatttcagcatgtcggagtcttttcaacacacacttctcaaactctaaggtcgag-ttcaacacacgacaaacaa |
26263831 |
T |
|
| Q |
286 |
atgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatga |
385 |
Q |
| |
|
||||||||| |||||| || || ||||| | ||||| | |||||| | | ||||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26263830 |
atgaggtagttcacaccttttcttgggttgccgcattaaccactagttccgctgtttattatcttataccttattgtataaactctcttattattaatga |
26263731 |
T |
|
| Q |
386 |
aatactat |
393 |
Q |
| |
|
||| |||| |
|
|
| T |
26263730 |
aatgctat |
26263723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 393
Target Start/End: Original strand, 26513495 - 26513857
Alignment:
| Q |
31 |
taaaactgtatctatctctcctatatgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaac |
130 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||| | ||||||| | ||||||| ||||||||||||| || |||| | ||||||| |||||| |
|
|
| T |
26513495 |
taaaactgtatctctctctcctatgtgttctgttgtcgtatgggaagctccatgcttattacacgccttacaattgccaagtaatatgcaatttgacaat |
26513594 |
T |
|
| Q |
131 |
atcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagc--atgccagag |
228 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| | ||| | |||| || || | ||||| |||||| |||||||||||| | ||| |||| |
|
|
| T |
26513595 |
gtcgattttgccttggatttaaagattacaacagacgtcttccatcatcaccgggtttacgttaccaaatttgagcaagtgatttcaacatatggaagag |
26513694 |
T |
|
| Q |
229 |
tctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaac |
328 |
Q |
| |
|
|||||| | |||||| ||||||||||||||| ||||| ||||| | ||||| ||| |||||||||||||| ||||| |||||| | |||| || |
|
|
| T |
26513695 |
tctctttaccacacatttctcaaactctaagatcgag-tttaatacacgacaaacaattgaggtagctcacatccttgcaggggttgccgcattgtctgt |
26513793 |
T |
|
| Q |
329 |
tagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
| || | | ||||||| |||| ||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
26513794 |
tggttccaaaatttattgtcatatacctcgatgtat-aactcacttattattaatgaaatactat |
26513857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 388
Target Start/End: Original strand, 16355287 - 16355390
Alignment:
| Q |
285 |
aatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatg |
384 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | | |||| |||||||| ||||||||||||| ||| | |||||||||||||| |||||||||||| |
|
|
| T |
16355287 |
aatgaggtagctcacactcttgttggggttgccgctttatttgctagtcctaatatttattatcaagtacattgttgtataaactcttttattattaatg |
16355386 |
T |
|
| Q |
385 |
aaat |
388 |
Q |
| |
|
|||| |
|
|
| T |
16355387 |
aaat |
16355390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 56 - 393
Target Start/End: Original strand, 16043294 - 16043630
Alignment:
| Q |
56 |
tgttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaaga |
155 |
Q |
| |
|
||||||||| || | ||||||||||| || ||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| ||||| ||||||||| |
|
|
| T |
16043294 |
tgttctgtttccatcggagaagctctgggtttattccacgccttacaattgctaagtgaaatgcaatttgacaacgtcgatttcgccttgcattcaaaga |
16043393 |
T |
|
| Q |
156 |
ttacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactc |
255 |
Q |
| |
|
||| |||||| |||| | ||||||| |||| ||||| |||||| | |||||||||| || ||| | ||||| || | || ||| ||||||||||| |
|
|
| T |
16043394 |
ttaaaacagacaccttccatcatcgtcaggttgacgttactgaatttaggcaagtgattttagaatgtcgaagtctttttaccatacatttctcaaactc |
16043493 |
T |
|
| Q |
256 |
taaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacc |
355 |
Q |
| |
|
||| ||||| |||||||||| ||||| ||||||||||||||||||| |||||| ||||| || ||||||| |||||| | || |||||||| |||| |
|
|
| T |
16043494 |
taatgtcga-ttttaacatgcgacaaccaaatgaggtagctcacacccttgctagggttgtcgcattatctgttagtcccaaatttcattatcatgtacc |
16043592 |
T |
|
| Q |
356 |
tcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16043593 |
tcgttgtataaactctcttattattaatgaaatgctat |
16043630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 98 - 388
Target Start/End: Complemental strand, 8987287 - 8986998
Alignment:
| Q |
98 |
ttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacag |
197 |
Q |
| |
|
|||||||| |||||||||||||||| |||| | ||||| || |||||||||||||||||||| ||| ||||| |||||||| |||||||||||| |
|
|
| T |
8987287 |
ttacaatgactaagtgacatgcaatttgacgaagtcgatgtcgtcttggattcaaagattacaatagacgccttccaccatcgtgaggttgatgttacag |
8987188 |
T |
|
| Q |
198 |
aatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctc |
297 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||| ||| | ||| || ||| |||||||| ||||||||||| |
|
|
| T |
8987187 |
aatttggacaagtaatttcagcatgccggagtcttttcaacacacacttctcaaacttgaagattgag-ttcaacgaacaacaagcaactgaggtagctc |
8987089 |
T |
|
| Q |
298 |
acactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaat |
388 |
Q |
| |
|
|||| |||| ||||||| |||||| | |||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8987088 |
acacccttgttggggttgctacattaactgttagtcccactatttattatcttgtacctcgttgtataaactctcttatttttaatgaaat |
8986998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 388
Target Start/End: Original strand, 25550625 - 25550786
Alignment:
| Q |
225 |
agagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattat |
324 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| ||| || |||||| ||||| |||||| |||| ||||||| |||| | | || |||||||| |
|
|
| T |
25550625 |
agagtctcttcagcacacatttctcaaactctaaggtagag-ttcaacatgcgacaaacaaatgtggtatctcacacccttg-tagagtagtcacattac |
25550722 |
T |
|
| Q |
325 |
caactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaat |
388 |
Q |
| |
|
| ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25550723 |
ccactagtctcgctatttattatcgtgtacctcgtcatataaactctcttattattaatgaaat |
25550786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 357
Target Start/End: Original strand, 17758888 - 17759006
Alignment:
| Q |
238 |
cacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtcctta |
337 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | | | |||||||||||||| |||||||||| | || |||||| |||||||||| |||||| | | |
|
|
| T |
17758888 |
cacacactttacaaactctaagatcgagttt-agtaggcgacaagcaaatgagatagctcacaccttagcgggggttgccacattatcagctagtcgtaa |
17758986 |
T |
|
| Q |
338 |
tatttattatcatttacctc |
357 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
17758987 |
aatttattatcatgtacctc |
17759006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 86 - 388
Target Start/End: Original strand, 52418695 - 52418996
Alignment:
| Q |
86 |
ttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaa |
185 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||| || ||||| || |||||||||||||||||| | ||| ||||| | |||||| |
|
|
| T |
52418695 |
ttattccacgccttacaatggttaagtgacatgcagtttgacgacgtcgatgtcgtcttggattcaaagattactatagacgccttccatcatcgttagg |
52418794 |
T |
|
| Q |
186 |
ttgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaa |
285 |
Q |
| |
|
||||||||||||||||||| || || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| | |||||| || |
|
|
| T |
52418795 |
ttgatgttacagaatttggacacgtaatttcagcattccagagtcttttcaacacacacttctcaaactctaaggtcgag-ttcaacaggcgacaagtaa |
52418893 |
T |
|
| Q |
286 |
atgaggtagctcacactcttgctggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatga |
385 |
Q |
| |
|
||||||||||| |||| |||||| ||||| | ||||| | ||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
52418894 |
atgaggtagcttacacccttgctagggttgccgcattaaccgctagtcccattatttattatcgtgtaccttattgtataaactctcttattattaatga |
52418993 |
T |
|
| Q |
386 |
aat |
388 |
Q |
| |
|
||| |
|
|
| T |
52418994 |
aat |
52418996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 58 - 267
Target Start/End: Original strand, 51748910 - 51749119
Alignment:
| Q |
58 |
ttctgttgccgtaggagaagctctaggcttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagatt |
157 |
Q |
| |
|
|||||||| ||| |||||||| | |||||||||| ||| | ||||||| ||||||||||| ||| |||| || ||||| || ||| |||||||||||| |
|
|
| T |
51748910 |
ttctgttgtcgtgggagaagccttgggcttattccgcgcttgacaatgggtaagtgacatgaaatttgacgacgtcgatgtcgtctttgattcaaagatt |
51749009 |
T |
|
| Q |
158 |
acaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactcta |
257 |
Q |
| |
|
|||| ||| |||| ||||||||| | ||||||||| ||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
51749010 |
acaatagacaccttccaccatcgtcaagttgatgttatagaatttggacaagtgatttcagcatgtcggagtcttttcaacacacacttctcaaactcta |
51749109 |
T |
|
| Q |
258 |
aggtcgagtt |
267 |
Q |
| |
|
|||||||||| |
|
|
| T |
51749110 |
aggtcgagtt |
51749119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 241 - 393
Target Start/End: Complemental strand, 55882181 - 55882030
Alignment:
| Q |
241 |
acacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtccttatat |
340 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||| | ||||| ||||||||||||||||||| ||||| |||||| | ||||| | ||||||| ||| |
|
|
| T |
55882181 |
acacttctcaaattctgaggtcgagttc-aacaggcgacaaacaaatgaggtagctcacacccttgccggggttgccgcattaaccgctagtcccactat |
55882083 |
T |
|
| Q |
341 |
ttattatcatttacctcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55882082 |
ttattaccgtatacctcgttgtataaactctcttattattaatgaaatgctat |
55882030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 55882304 - 55882229
Alignment:
| Q |
86 |
ttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaa |
161 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||| || ||||| || |||||||||||| ||||||| |
|
|
| T |
55882304 |
ttattccacgccatacaatggttaagtgacatgcaatttgaagacgtcgatgtcgtcttggattcaaatattacaa |
55882229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 86 - 323
Target Start/End: Original strand, 20251327 - 20251563
Alignment:
| Q |
86 |
ttattccacgccttacaatggctaagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaa |
185 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||| || ||| | || |||||||||||||||||||| ||| ||||| | ||||||| |
|
|
| T |
20251327 |
ttattccacgccttacaatggttaagtgacatgcaatttgatgacgtcgttgtcgtcttggattcaaagattacaatagacgccttccatcatcgtcagg |
20251426 |
T |
|
| Q |
186 |
ttgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaa |
285 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||| |||| ||||| ||||||||||||||||||||||||||| || || | | ||||||||| |
|
|
| T |
20251427 |
ttgatgttacagaatttggacaagtaattttagcatgccagcgtcttttcaaaacacacttctcaaactctaaggtcgag-ttcaataggcgacaagcaa |
20251525 |
T |
|
| Q |
286 |
atgaggtagctcacactcttgctggggttatcacatta |
323 |
Q |
| |
|
| |||||||||| ||| ||||| |||||| ||||||| |
|
|
| T |
20251526 |
aggaggtagctcgcacccttgccggggttgccacatta |
20251563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 7642814 - 7642651
Alignment:
| Q |
142 |
cttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaagtgatttcagcatgccagagtctcttcaacaca |
241 |
Q |
| |
|
||||||||||||||||| |||||| | ||| || ||| || ||||||||||| ||||||| ||||| ||||||| ||| | ||||||||||||||| |
|
|
| T |
7642814 |
cttggattcaaagattataacagacgtcttccactatcatcagtttgatgttacaaaatttggacaagtaatttcagtatgtcgaagtctcttcaacaca |
7642715 |
T |
|
| Q |
242 |
cacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttg |
306 |
Q |
| |
|
||||||||||||||||||| || || ||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
7642714 |
tacttctcaaactctaaggttaag-ttcaacatatgacaagcaaatgagatagctcacacccttg |
7642651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 11152263 - 11152204
Alignment:
| Q |
275 |
gagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtcc |
334 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||| |
|
|
| T |
11152263 |
gagacaagccaatgaggtagctcacacgctagctggggttgccacattatcagctagtcc |
11152204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 393
Target Start/End: Complemental strand, 26235747 - 26235464
Alignment:
| Q |
109 |
aagtgacatgcaatctgacaacatcgatttcaccttggattcaaagattacaacagatgcctttaaccatcgtcgaattgatgttacagaatttggccaa |
208 |
Q |
| |
|
|||||||||||||| ||||||| || | || ||||| ||| ||||||||||||||| ||| ||||||||||| ||||| |||| ||||| | ||| |
|
|
| T |
26235747 |
aagtgacatgcaatttgacaacgtcaactttgccttgtatttaaagattacaacagacatcttccaccatcgtcgagttgatactacataatttagacaa |
26235648 |
T |
|
| Q |
209 |
gtgatttcagcatgccagagtctcttcaacacacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgct |
308 |
Q |
| |
|
||||||||| |||| | ||||||||||| | |||||||||||||||||| |||| || || | |||||| ||||||||||||||| | ||||| |
|
|
| T |
26235647 |
gtgatttcaacatgttaaagtctcttcaatatacacttctcaaactctaaaaccgag-ttcaatagacgacaagtaaatgaggtagctcatatctttgct |
26235549 |
T |
|
| Q |
309 |
ggggttatcacattatcaactagtccttatatttattatcatttacctcgttgtataaactctcttattattaatgaaatactat |
393 |
Q |
| |
|
|| || | | ||||| ||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
26235548 |
ggagtagccgctttatccgttagtctcaatatttattatcatgtactttattgtataaactctcttattattaatgaaatgctat |
26235464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 30449580 - 30449487
Alignment:
| Q |
240 |
cacacttctcaaactctaaggtcgagttttaacatgagacaagcaaatgaggtagctcacactcttgctggggttatcacattatcaactagtcc |
334 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| || ||| ||||||||||||||||||||||||| | || |||||| |||||||||||||||||| |
|
|
| T |
30449580 |
cacacttcacaaactcgaaggttgagttt-aatatgcaacaagcaaatgaggtagctcacactttagcaggggttgccacattatcaactagtcc |
30449487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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