View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8972_low_16 (Length: 371)

Name: NF8972_low_16
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8972_low_16
NF8972_low_16
[»] chr8 (11 HSPs)
chr8 (1-362)||(15937118-15937479)
chr8 (57-145)||(15965370-15965458)
chr8 (57-145)||(16004578-16004666)
chr8 (66-145)||(15977342-15977421)
chr8 (64-145)||(19185359-19185441)
chr8 (64-145)||(15984098-15984179)
chr8 (64-145)||(15953066-15953147)
chr8 (326-362)||(19188886-19188922)
chr8 (60-135)||(15939272-15939347)
chr8 (75-145)||(15984001-15984071)
chr8 (64-145)||(19150898-19150979)
[»] chr2 (1 HSPs)
chr2 (156-204)||(1787517-1787565)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 15937118 - 15937479
Alignment:
Q  1 acaaaactggtgaaaattggtcactggtttcatggattgctaattcaaaactattaccagcttctggtccattcaggcttgattgggaacccataggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15937118 acaaaactggtgaaaattggtcactggtttcatggattgctaattcaaaactattaccagcttctggtccattcaggcttgattgggaacccataggaaa 15937217  T
Q  101 ggaattggtcattaagcatagagaaaaagtttactggaaaagtggtaagttgatcagacaaaataaatttgagcatatagctgaagataaagaagttcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15937218 ggaattggtcattaagcatagagaaaaagtttactggaaaagtggtaagttgatcagacataataaatttgagcatatagctgaagataaagaagttcag 15937317  T
Q  201 tacacatctgtgtcgaatgagagtgaagattccatctcatttacactgtcaaatgatgaagactttacaatatgggctctattgggaaatgggcagttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15937318 tacacatctgtgtcgaatgagagtgaagattccatctcatttacactgtcaactgatgaagactttacaatatgggctctattgggaaatgggcagttga 15937417  T
Q  301 taaacaggaataggaaaggagatactttagcaagggctgatgtgtgttatggctacaacacc 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15937418 taaacaggaataggaaaggagatactttagcaagggctgatgtgtgttatggctacaacacc 15937479  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 15965458 - 15965370
Alignment:
Q  57 ccagcttctggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    |||||||||||| ||||||||||||| |||||||||| | |||| ||||||||||| ||||||||||||||||| || |||| ||||||    
T  15965458 ccagcttctggtacattcaggcttgagtgggaacccacaagaaaagaattggtcatcaagcatagagaaaaagtatattggacaagtgg 15965370  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 16004578 - 16004666
Alignment:
Q  57 ccagcttctggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    |||||||||||||||||||||||||| |||||||||| |  ||| ||||||||||| ||||||||||||||||| || |||| ||||||    
T  16004578 ccagcttctggtccattcaggcttgagtgggaacccacaataaaagaattggtcatcaagcatagagaaaaagtatattggacaagtgg 16004666  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 15977421 - 15977342
Alignment:
Q  66 ggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    ||||||||||| ||||| |||||| ||| | |||| ||||||| ||| ||||||||||||||||||||||||| ||||||    
T  15977421 ggtccattcagacttgagtgggaagccacaagaaaagaattggacatcaagcatagagaaaaagtttactggacaagtgg 15977342  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 19185359 - 19185441
Alignment:
Q  64 ctggtccattcaggcttga-ttgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    ||||||||||||||||||| |||||||||||    ||| ||||||||||| |||||||||||||||||||| |||| ||||||    
T  19185359 ctggtccattcaggcttgaattgggaacccaacataaaagaattggtcatcaagcatagagaaaaagtttattggagaagtgg 19185441  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 15984179 - 15984098
Alignment:
Q  64 ctggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    ||||||||||||||||||| |||||| ||| | |||| |||||||| || |||| ||||||||||||||| |||| ||||||    
T  15984179 ctggtccattcaggcttgagtgggaagccacaagaaaagaattggttatcaagcgtagagaaaaagtttattggacaagtgg 15984098  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 15953066 - 15953147
Alignment:
Q  64 ctggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    ||||||||||||| ||||| |||||| ||| | |||| |||||||| || |||| ||||||||||||||| |||| ||||||    
T  15953066 ctggtccattcagacttgaatgggaagccacaagaaaagaattggttatcaagcgtagagaaaaagtttattggacaagtgg 15953147  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 19188886 - 19188922
Alignment:
Q  326 tttagcaagggctgatgtgtgttatggctacaacacc 362  Q
    |||||||| ||||||||||||||||||||||||||||    
T  19188886 tttagcaaaggctgatgtgtgttatggctacaacacc 19188922  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 15939272 - 15939347
Alignment:
Q  60 gcttctggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttact 135  Q
    |||||||||| |||||| | |||||||||||| ||| | |  ||||| ||||||||||| |||||| |||||||||    
T  15939272 gcttctggtctattcagacatgattgggaaccgataagtagagaattagtcattaagcacagagaacaagtttact 15939347  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 15984071 - 15984001
Alignment:
Q  75 aggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    |||||||| |||||| ||| | |||| |||||||| || |||| ||||||||||||||| |||| ||||||    
T  15984071 aggcttgagtgggaagccacaagaaaagaattggttatcaagcgtagagaaaaagtttattggacaagtgg 15984001  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 19150979 - 19150898
Alignment:
Q  64 ctggtccattcaggcttgattgggaacccataggaaaggaattggtcattaagcatagagaaaaagtttactggaaaagtgg 145  Q
    ||||||||||||| ||||| |||||  |||   |||| |||||||| || |||| ||||||||||||||| |||| ||||||    
T  19150979 ctggtccattcagtcttgaatgggaggccacgagaaaagaattggttatcaagcgtagagaaaaagtttattggacaagtgg 19150898  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 1787565 - 1787517
Alignment:
Q  156 agacaaaataaatttgagcatatagctgaagataaagaagttcagtaca 204  Q
    ||||| ||||||||||||||||||  || ||| ||||||||||||||||    
T  1787565 agacataataaatttgagcatatacatgcagacaaagaagttcagtaca 1787517  T

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