View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8972_low_18 (Length: 338)
Name: NF8972_low_18
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 46162081 - 46161763
Alignment:
| Q |
4 |
tcagcttcatcatactgaactagtcacctccattaaagcaacatgcagttatgttctcatat----tgaacaaaaagtaggcttcgccatttgttcccac |
99 |
Q |
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| T |
46162081 |
tcagcttcatcatactgaactagtcatctccattaaagcaacatgcagttatgttcccatatatattgaacaaaaagtaggcttcgccatttgttcccac |
46161982 |
T |
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| Q |
100 |
cccagttgacagccaaagaagataattatatatttttctgggaagatgtttattgttaagagaaaaagtttgacaagaaaataaatgattatatgtggca |
199 |
Q |
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| T |
46161981 |
cccagttgacagctgaagaagataattatatattgttctgggaagatgtttattgttaagagaaaaagtttgacaagaaaataaatg---atatgtggca |
46161885 |
T |
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| Q |
200 |
gcatataacatagaatttgattagtcaatatctcttattattatgcattcttctcttaatttcttgtataaatctttcgtaacgaatagcactgctcctt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46161884 |
gcatataacatagaatttgattagtcaatatctcttattattatgcattcttctcttaatttcttgtataaatctttcg-aacgaatagcactgctcctt |
46161786 |
T |
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| Q |
300 |
ggcccttgcttacgtcaaactca |
322 |
Q |
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| T |
46161785 |
ggcccttgcttacgtcaaactca |
46161763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 126 - 293
Target Start/End: Complemental strand, 46169285 - 46169121
Alignment:
| Q |
126 |
tatatatttttctgggaagatgtttattgttaagagaaaaagtttgacaagaaaataaatgattatatgtggcagcatataacatagaatttgattagtc |
225 |
Q |
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| T |
46169285 |
tatatattgttctgggaaaatgtttatcgttaaga--aaaagtttgacaagaaaataaatgattatatgtagcagcatgtaacatagaatttgattagtc |
46169188 |
T |
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| Q |
226 |
aatatctcttattattatgcattcttctcttaatttcttgtataaatctttcgtaacgaatagcactg |
293 |
Q |
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| T |
46169187 |
aa-atctcttattattatgcattcttctctttatttcttgtatagatctttcgtaacaaatagcactg |
46169121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 46245176 - 46245279
Alignment:
| Q |
4 |
tcagcttcatcatactgaactagtcacctccattaaagcaacatgcagttatgttctcatattgaacaaaaagtaggcttcgccatttgttcccacccca |
103 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
46245176 |
tcagcttcatcatactgaactagtcatctccattgaagcatcatgcagttatgttcccatattgaacaaaacgtaggcttcaccatttgttcccacccca |
46245275 |
T |
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| Q |
104 |
gttg |
107 |
Q |
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|||| |
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| T |
46245276 |
gttg |
46245279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 46254864 - 46254967
Alignment:
| Q |
4 |
tcagcttcatcatactgaactagtcacctccattaaagcaacatgcagttatgttctcatattgaacaaaaagtaggcttcgccatttgttcccacccca |
103 |
Q |
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||||||||||| |||||||||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||| |||||||| |||| |
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| T |
46254864 |
tcagcttcatcgtactgaactagtcatctccattgaagcatcatgcagctatgttcccatattgaacaaatagtaggcttcaccaaatgttcccaaccca |
46254963 |
T |
|
| Q |
104 |
gttg |
107 |
Q |
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|||| |
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| T |
46254964 |
gttg |
46254967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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