View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8972_low_2 (Length: 834)

Name: NF8972_low_2
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8972_low_2
NF8972_low_2
[»] chr6 (21 HSPs)
chr6 (232-342)||(15611695-15611804)
chr6 (593-790)||(15611415-15611615)
chr6 (113-193)||(15611811-15611891)
chr6 (601-732)||(521159-521292)
chr6 (438-530)||(20969568-20969660)
chr6 (439-522)||(32183983-32184066)
chr6 (414-531)||(5188266-5188383)
chr6 (612-732)||(32183771-32183891)
chr6 (448-531)||(13185647-13185730)
chr6 (446-525)||(22747161-22747240)
chr6 (445-523)||(521371-521449)
chr6 (463-531)||(15134866-15134934)
chr6 (612-724)||(21208156-21208268)
chr6 (608-730)||(15135017-15135140)
chr6 (457-522)||(1040380-1040445)
chr6 (464-531)||(15489571-15489638)
chr6 (608-701)||(5188106-5188197)
chr6 (611-730)||(15489375-15489493)
chr6 (263-306)||(15589717-15589760)
chr6 (438-508)||(6837765-6837835)
chr6 (18-48)||(15611971-15612001)
[»] chr7 (21 HSPs)
chr7 (404-524)||(41966037-41966157)
chr7 (602-732)||(12287076-12287206)
chr7 (439-531)||(1706368-1706460)
chr7 (402-525)||(27164337-27164460)
chr7 (414-531)||(965431-965551)
chr7 (439-525)||(6182674-6182760)
chr7 (448-521)||(1778839-1778912)
chr7 (619-730)||(965230-965341)
chr7 (439-522)||(12287286-12287369)
chr7 (610-712)||(27164153-27164255)
chr7 (610-671)||(34519426-34519487)
chr7 (443-531)||(4905063-4905150)
chr7 (471-531)||(33037416-33037476)
chr7 (610-730)||(35015870-35015990)
chr7 (464-531)||(34519278-34519345)
chr7 (611-733)||(4167291-4167413)
chr7 (446-525)||(35015704-35015783)
chr7 (593-734)||(1910959-1911100)
chr7 (610-730)||(1706541-1706661)
chr7 (464-531)||(4163278-4163345)
chr7 (681-730)||(47066133-47066182)
[»] chr2 (12 HSPs)
chr2 (610-730)||(9032683-9032803)
chr2 (441-531)||(5732758-5732848)
chr2 (620-733)||(9548459-9548571)
chr2 (610-730)||(19494730-19494850)
chr2 (406-531)||(9032468-9032593)
chr2 (439-527)||(14169962-14170050)
chr2 (467-525)||(7315193-7315251)
chr2 (610-730)||(38935027-38935148)
chr2 (610-725)||(7315339-7315456)
chr2 (413-525)||(9548612-9548723)
chr2 (667-730)||(5732557-5732620)
chr2 (667-730)||(5803075-5803138)
[»] chr4 (28 HSPs)
chr4 (404-523)||(44515851-44515969)
chr4 (610-734)||(36755106-36755230)
chr4 (610-734)||(56192208-56192332)
chr4 (610-732)||(16529826-16529948)
chr4 (440-531)||(46433028-46433119)
chr4 (645-730)||(13205687-13205772)
chr4 (402-531)||(55692849-55692978)
chr4 (454-531)||(56192413-56192490)
chr4 (439-531)||(3533842-3533934)
chr4 (439-522)||(45548992-45549075)
chr4 (593-719)||(3232730-3232856)
chr4 (464-525)||(29844962-29845023)
chr4 (404-531)||(36284446-36284573)
chr4 (416-531)||(37997100-37997215)
chr4 (438-520)||(37182423-37182505)
chr4 (447-531)||(13205505-13205589)
chr4 (610-730)||(38476244-38476364)
chr4 (402-525)||(54183872-54183994)
chr4 (602-734)||(3534006-3534139)
chr4 (470-531)||(15024521-15024582)
chr4 (404-525)||(12832260-12832381)
chr4 (446-531)||(16530029-16530113)
chr4 (610-691)||(36284654-36284735)
chr4 (601-733)||(37996900-37997032)
chr4 (681-732)||(29845163-29845214)
chr4 (481-531)||(3232628-3232678)
chr4 (609-727)||(28992628-28992745)
chr4 (610-727)||(55693063-55693180)
[»] chr8 (21 HSPs)
chr8 (609-735)||(41407189-41407315)
chr8 (439-531)||(6148238-6148330)
chr8 (415-531)||(42845359-42845475)
chr8 (437-520)||(3692079-3692162)
chr8 (610-733)||(8845552-8845675)
chr8 (608-734)||(6148411-6148535)
chr8 (439-523)||(20765806-20765890)
chr8 (612-734)||(7186180-7186302)
chr8 (442-531)||(1597942-1598031)
chr8 (414-527)||(3346622-3346735)
chr8 (446-521)||(7186395-7186470)
chr8 (404-531)||(43429518-43429645)
chr8 (610-730)||(43429318-43429431)
chr8 (610-671)||(42845259-42845320)
chr8 (620-732)||(3346811-3346923)
chr8 (404-531)||(43417671-43417797)
chr8 (462-524)||(8845771-8845832)
chr8 (610-726)||(1598113-1598229)
chr8 (620-735)||(37127652-37127767)
chr8 (443-493)||(39949753-39949803)
chr8 (482-523)||(37127512-37127553)
[»] scaffold0355 (1 HSPs)
scaffold0355 (413-529)||(2559-2675)
[»] chr1 (30 HSPs)
chr1 (404-531)||(33016571-33016698)
chr1 (404-521)||(16255237-16255354)
chr1 (441-525)||(29701155-29701239)
chr1 (464-531)||(14625151-14625218)
chr1 (406-525)||(50378084-50378203)
chr1 (441-523)||(39923443-39923525)
chr1 (414-531)||(50377717-50377834)
chr1 (406-526)||(8259243-8259363)
chr1 (416-524)||(51776750-51776858)
chr1 (446-524)||(20381054-20381132)
chr1 (439-525)||(25388896-25388982)
chr1 (652-729)||(33016375-33016452)
chr1 (463-531)||(48379656-48379724)
chr1 (446-525)||(15342690-15342769)
chr1 (610-725)||(47024310-47024425)
chr1 (631-732)||(39923243-39923342)
chr1 (609-725)||(12140879-12140995)
chr1 (439-523)||(24120165-24120249)
chr1 (454-522)||(42693315-42693383)
chr1 (675-734)||(25389758-25389817)
chr1 (601-688)||(50377905-50377992)
chr1 (439-525)||(26450858-26450943)
chr1 (609-730)||(51776543-51776664)
chr1 (453-525)||(5959197-5959268)
chr1 (613-732)||(8259452-8259571)
chr1 (416-531)||(9693829-9693944)
chr1 (614-733)||(16255449-16255567)
chr1 (681-728)||(48379474-48379521)
chr1 (675-733)||(15342902-15342960)
chr1 (600-693)||(4085544-4085637)
[»] scaffold0006 (1 HSPs)
scaffold0006 (406-524)||(178153-178271)
[»] scaffold1940 (2 HSPs)
scaffold1940 (439-531)||(733-825)
scaffold1940 (612-730)||(547-665)
[»] chr3 (18 HSPs)
chr3 (417-525)||(29078688-29078796)
chr3 (404-508)||(47864804-47864908)
chr3 (415-524)||(20935942-20936050)
chr3 (454-530)||(20826382-20826458)
chr3 (610-730)||(29078886-29079005)
chr3 (593-727)||(19332160-19332296)
chr3 (420-523)||(11137808-11137911)
chr3 (610-725)||(26952519-26952634)
chr3 (437-523)||(19554732-19554818)
chr3 (610-728)||(20936137-20936254)
chr3 (612-730)||(37333172-37333290)
chr3 (601-726)||(26919331-26919451)
chr3 (451-523)||(47495606-47495677)
chr3 (413-525)||(48962395-48962507)
chr3 (446-513)||(18090570-18090637)
chr3 (455-526)||(38521859-38521929)
chr3 (455-531)||(10046397-10046471)
chr3 (470-531)||(19332037-19332098)
[»] chr5 (11 HSPs)
chr5 (610-730)||(23418859-23418979)
chr5 (397-524)||(23419059-23419186)
chr5 (610-730)||(9622357-9622477)
chr5 (610-730)||(19279427-19279547)
chr5 (619-732)||(43100930-43101042)
chr5 (602-732)||(16561739-16561869)
chr5 (645-734)||(19602023-19602116)
chr5 (457-524)||(35377772-35377839)
chr5 (451-493)||(10667305-10667347)
chr5 (436-524)||(5422955-5423043)
chr5 (438-518)||(9622170-9622250)
[»] scaffold0127 (1 HSPs)
scaffold0127 (438-530)||(22910-23002)
[»] scaffold0069 (1 HSPs)
scaffold0069 (446-524)||(60843-60921)
[»] scaffold0001 (1 HSPs)
scaffold0001 (612-730)||(428283-428400)
[»] scaffold0039 (2 HSPs)
scaffold0039 (404-502)||(94105-94203)
scaffold0039 (610-664)||(101626-101680)
[»] scaffold0466 (1 HSPs)
scaffold0466 (414-522)||(158-266)
[»] scaffold0281 (1 HSPs)
scaffold0281 (675-730)||(22281-22336)
[»] scaffold0332 (1 HSPs)
scaffold0332 (610-728)||(4555-4673)
[»] scaffold1004 (1 HSPs)
scaffold1004 (455-508)||(691-744)
[»] scaffold0107 (1 HSPs)
scaffold0107 (697-730)||(49986-50019)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 232 - 342
Target Start/End: Complemental strand, 15611804 - 15611695
Alignment:
Q  232 tgttagtatgcaattattaattatttaatataacactcaatttatcatgcaatacatgaagttcttttgactcttacatttgaaatacagatgtgcctct 331  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15611804 tgttagtatgcaattattaattaattaatataacactcaatt-atcatgcaatacatgaagttcttttgactcttacatttgaaatacagatgtgcctct 15611706  T
Q  332 actaaacaact 342  Q
    |||||||||||    
T  15611705 actaaacaact 15611695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 593 - 790
Target Start/End: Complemental strand, 15611615 - 15611415
Alignment:
Q  593 ggaccaataaaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtgg 692  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  ||| |||||||||||| ||||| | ||||||||||||||||    
T  15611615 ggaccaataaaaaataaagagagagtgtgcttccatagtcacctttctccacagacaaccatgtattttactccacaataaggatgtttatttaatgtgg 15611516  T
Q  693 ta---ttaaataagttaagcacccaccattgtggatggtctaagttccctaaataannnnnnngagttgttacaattttcacccaacattatatagtcac 789  Q
    ||   |||||||  ||||||| |||| ||| |||||| ||||| || ||||||||        ||| |||||||||||||||||||||||||||||||||    
T  15611515 tagtgttaaatagattaagcatccactattatggatgatctaaatttcctaaatattttttttgagatgttacaattttcacccaacattatatagtcac 15611416  T
Q  790 g 790  Q
    |    
T  15611415 g 15611415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 15611891 - 15611811
Alignment:
Q  113 gttctccttttgtaaaacttgaaatttggaccttcaatttcttaacttttaactcacagcggttatgctatccaacttctt 193  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15611891 gttctccttttgtagaacttgaaatttggaccttcaatttcttaacttttaactcacagcggttatgctatccaacttctt 15611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 601 - 732
Target Start/End: Complemental strand, 521292 - 521159
Alignment:
Q  601 aaaaaataaagagagagtg--tgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaa 698  Q
    ||||||||||||||||| |  |||||||| ||||||| |||| || ||||||||||||||||||||||| |||  || || ||||||||||||||  |||    
T  521292 aaaaaataaagagagagaggatgcttccaaagccacccttcttcatagacactcatatattttactccacaatggagatgcttatttaatgtggtgctaa 521193  T
Q  699 ataagttaagcacccaccattgtggatggtctaa 732  Q
    ||| ||||||||  ||||||||||||||||||||    
T  521192 ataggttaagcatgcaccattgtggatggtctaa 521159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 438 - 530
Target Start/End: Original strand, 20969568 - 20969660
Alignment:
Q  438 ctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccac 530  Q
    ||||||||||||||| ||||||| |||| ||||| |||| || ||||||||||||| | ||||||| |||| |||||||||||||||| ||||    
T  20969568 ctatgtctacatcatcaattttacggtactacttcataagcaccaattttctccaacctagcacctgaaaagaaattattaaataggtcccac 20969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 439 - 522
Target Start/End: Complemental strand, 32184066 - 32183983
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaata 522  Q
    |||||| |||||| | |||||| |||||||||||||||||| ||||||||||||| ||| ||||| |||| |||||||||||||    
T  32184066 tatgtccacatcacttattttacggtaatacttaataaacaccaattttctccaacccaacacctcaaaagaaattattaaata 32183983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 414 - 531
Target Start/End: Complemental strand, 5188383 - 5188266
Alignment:
Q  414 aaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaat 513  Q
    ||||| ||||||||||| |||| | ||| |  |||||| | |||||| ||||||| ||||||| || ||||||||| ||||||||||| | |||| ||||    
T  5188383 aaattagatgcttaaatgggttttttatatacacatcacttattttatggtaatatttaataagcaccaattttcttcaatccagcacttcaaaagaaat 5188284  T
Q  514 tattaaataggttccaca 531  Q
    |||||||||| |||||||    
T  5188283 tattaaatagtttccaca 5188266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 612 - 732
Target Start/End: Complemental strand, 32183891 - 32183771
Alignment:
Q  612 agagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcac 711  Q
    |||||| ||||||||||||||||| ||||||| || ||| |||||||| ||||||| |||   ||||  |||||||| || |  ||||||  | ||||||    
T  32183891 agagagggtgcttccatagccaccgttctccatagccacccatatattatactccacaatgggggtgcctatttaatatgatgctaaatagatgaagcac 32183792  T
Q  712 ccaccattgtggatggtctaa 732  Q
    |||||||||||||||||||||    
T  32183791 ccaccattgtggatggtctaa 32183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 448 - 531
Target Start/End: Complemental strand, 13185730 - 13185647
Alignment:
Q  448 atcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||||| |||| ||||||||||||||| || ||||||||||||| |||||| || |||| ||||||||||||| || |||||    
T  13185730 atcattaactttacggtaatacttaataagcaccaattttctccaacccagcagctcaaaagaaattattaaataagtcccaca 13185647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 525
Target Start/End: Complemental strand, 22747240 - 22747161
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||| | |||||| ||||||||||||||| | |||||||||||||| |||| |||| |||| ||||||||||||||||    
T  22747240 acatcactcattttacggtaatacttaataagcgtcaattttctccaacccagtacctcaaaagaaattattaaataggt 22747161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 521449 - 521371
Alignment:
Q  445 tacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||||||||||| |||  |||| ||| | ||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  521449 tacatcattaatattactgtaacactcagtaaacatcaattttctctaatccagcacctcaaaagaaattattaaatag 521371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 463 - 531
Target Start/End: Original strand, 15134866 - 15134934
Alignment:
Q  463 gtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||||||||||||| ||||||||||||| | || |||| |||| |||||||||||||| |||||||    
T  15134866 gtaatacttaataaacaccaattttctccaacctagtaccttaaaagaaattattaaatagattccaca 15134934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 612 - 724
Target Start/End: Complemental strand, 21208268 - 21208156
Alignment:
Q  612 agagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcac 711  Q
    |||||| ||||||||||||||||  ||||||| || ||| |||||||| | ||||| ||||| ||||  ||||||||  ||| ||||||| || ||||||    
T  21208268 agagagggtgcttccatagccactcttctccatagccacccatatattattctccacaataagggtgcctatttaatacggtgttaaataggtgaagcac 21208169  T
Q  712 ccaccattgtgga 724  Q
     ||||||||||||    
T  21208168 acaccattgtgga 21208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 730
Target Start/End: Original strand, 15135017 - 15135140
Alignment:
Q  608 aaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataat-aaaggtgtttatttaatgtggtattaaataagtta 706  Q
    |||||||||| ||||||||||||||||| ||||||| || ||| ||| |||| ||||||| |||  | ||||  |||||||||||||  |||||| || |    
T  15135017 aaagagagagggtgcttccatagccacccttctccatagccacccatgtattatactccacaatggagggtgcctatttaatgtggtgctaaataggtga 15135116  T
Q  707 agcacccaccattgtggatggtct 730  Q
    || |||| ||||||| ||||||||    
T  15135117 agtaccctccattgttgatggtct 15135140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 1040380 - 1040445
Alignment:
Q  457 tttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaata 522  Q
    |||| ||||||||||||||| |||| |||||||||||  || ||||| ||||||||||||||||||    
T  1040380 tttacggtaatacttaataatcatccattttctccaactcaacacctcaaaataaattattaaata 1040445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 464 - 531
Target Start/End: Complemental strand, 15489638 - 15489571
Alignment:
Q  464 taatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||||||||| || ||||||||||||| ||| ||| | |||| |||||||||||||||| |||||    
T  15489638 taatacttaataagcaccaattttctccaacccaacacatcaaaagaaattattaaataggtcccaca 15489571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 701
Target Start/End: Complemental strand, 5188197 - 5188106
Alignment:
Q  608 aaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaata 701  Q
    ||||||| || ||||||||||| |||||||||  || |||||| |||||  | ||||||| ||||||  ||||||||||||||||| |||||||    
T  5188197 aaagagatagggtgcttccataaccaccattcctcaaagacacccatat--tatactccacaataaaaatgtttatttaatgtggtgttaaata 5188106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 730
Target Start/End: Complemental strand, 15489493 - 15489375
Alignment:
Q  611 gagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagca 710  Q
    ||||||| ||||||||||||||||  ||||||| |||||| || ||||| ||||||| |||   ||||  |||||||||||||  |||||| || || ||    
T  15489493 gagagagggtgcttccatagccacttttctccatagacacccaaatattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaaaca 15489394  T
Q  711 cccaccattgtggatggtct 730  Q
    | |  |||||||||||||||    
T  15489393 ctc-tcattgtggatggtct 15489375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 15589760 - 15589717
Alignment:
Q  263 aacactcaatttatcatgcaatacatgaagttcttttgactctt 306  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||    
T  15589760 aacactcaatttatcatgcaatatatgaaattcatttgactctt 15589717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 508
Target Start/End: Original strand, 6837765 - 6837835
Alignment:
Q  438 ctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaa 508  Q
    ||||||| ||||||| |||||||   ||||||||||||| ||||||||||| |||| | ||||||| ||||    
T  6837765 ctatgtccacatcatcaattttactttaatacttaataagcatcaattttcaccaacctagcacctcaaaa 6837835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 15612001 - 15611971
Alignment:
Q  18 aatactataataagatgcatcttgtgatttg 48  Q
    |||||||||||||||||||||||||||||||    
T  15612001 aatactataataagatgcatcttgtgatttg 15611971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 404 - 524
Target Start/End: Original strand, 41966037 - 41966157
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||||| ||||||||||| |||||| ||||   | ||||||||| ||||||||||  |||||||||||||| |||||||||||||||| ||| |||||    
T  41966037 agagcaccttaaattggatgtttaaatgggtttcttgtgtctacattattaattttacagtaatacttaataagcatcaattttctccaacccaacacct 41966136  T
Q  504 aaaaataaattattaaatagg 524  Q
     |||| |||||||||||||||    
T  41966137 caaaagaaattattaaatagg 41966157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 602 - 732
Target Start/End: Complemental strand, 12287206 - 12287076
Alignment:
Q  602 aaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaata 701  Q
    |||||| ||||||||| |||||| |||||||||| ||||  | |||||||||| | || ||||||| |||  |||||  ||||||||||||| |||||||    
T  12287206 aaaaatgaagagagagggtgctttcatagccacccttcttgatagacactcatgtcttatactccacaatggaggtgcctatttaatgtggtgttaaata 12287107  T
Q  702 agttaagcacccaccattgtggatggtctaa 732  Q
     || ||||||||||||||| |||||||||||    
T  12287106 ggtaaagcacccaccattgaggatggtctaa 12287076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 439 - 531
Target Start/End: Original strand, 1706368 - 1706460
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| |||||| | ||||||  || ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  1706368 tatgtccacatcactcattttaccgtcatacttaataagcatcaattttctccaatccagcaccttaaaagaaattattaaataggtcccaca 1706460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 402 - 525
Target Start/End: Complemental strand, 27164460 - 27164337
Alignment:
Q  402 atagagcaccataaattggatgcttaaattggttctc-tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagca 500  Q
    ||||||||||  ||||||| ||||||||| || |||| | ||||| ||||||||||||||  |||||| |||||||||| ||||||||||||| ||| ||    
T  27164460 atagagcaccccaaattgggtgcttaaat-ggatctcatgtgtctgcatcattaattttatagtaatatttaataaacaccaattttctccaacccaaca 27164362  T
Q  501 cctaaaaataaattattaaataggt 525  Q
    ||| |||| |||||| |||||||||    
T  27164361 cctcaaaagaaattactaaataggt 27164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 414 - 531
Target Start/End: Complemental strand, 965551 - 965431
Alignment:
Q  414 aaattggatgcttaaattggttctc-tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaata-- 510  Q
    ||||||||||||||||| || |||| | |||| ||||||||||||||| | |||||||||||||||| | ||||||||||| ||| ||||| |||| |      
T  965551 aaattggatgcttaaat-ggatctcatgtgtccacatcattaattttacgctaatacttaataaacacccattttctccaacccaacacctcaaaagaaa 965453  T
Q  511 -aattattaaataggttccaca 531  Q
     |||||||||||||||||||||    
T  965452 taattattaaataggttccaca 965431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 439 - 525
Target Start/End: Complemental strand, 6182760 - 6182674
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    ||||||||||||  | |||||| ||||||||||||||| || || |||||| ||| ||||||||| |||||||||||||||||||||    
T  6182760 tatgtctacatcgctcattttacggtaatacttaataagcaccacttttcttcaacccagcacctcaaaataaattattaaataggt 6182674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 1778912 - 1778839
Alignment:
Q  448 atcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaat 521  Q
    |||||| |||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  1778912 atcattcattttacggtaatatttaataaacaccaattttctccaatccaacacctcaaaagaaattattaaat 1778839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 619 - 730
Target Start/End: Complemental strand, 965341 - 965230
Alignment:
Q  619 gtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccat 718  Q
    |||||||||||| ||| |||||||| |||||| |||||||||||||||| |||   ||||  |||||||||||||  |||||| ||||| ||| || |||    
T  965341 gtgcttccatagtcactattctccatagacacccatatattttactccacaatgggggtgcctatttaatgtggtgctaaatatgttaaacactcatcat 965242  T
Q  719 tgtggatggtct 730  Q
    |||| |||||||    
T  965241 tgtgaatggtct 965230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 439 - 522
Target Start/End: Complemental strand, 12287369 - 12287286
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaata 522  Q
    |||||| |||||| | ||||||  |||||||||||| | || ||||||||||||||||||||||| |||| |||||||||||||    
T  12287369 tatgtccacatcactcattttaccgtaatacttaatgagcaccaattttctccaatccagcaccttaaaagaaattattaaata 12287286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 610 - 712
Target Start/End: Complemental strand, 27164255 - 27164153
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||  ||| ||||||| ||||||||||| | || ||||||||||||||||||||||||  | |||  |||||||||| || ||||||| |||||||    
T  27164255 agagagaaggtgtttccataaccaccattctctataggcactcatatattttactccataatggatgtgcctatttaatgtagtgttaaataggttaagc 27164156  T
Q  710 acc 712  Q
    |||    
T  27164155 acc 27164153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 671
Target Start/End: Original strand, 34519426 - 34519487
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataat 671  Q
    |||||||| ||||||||||||||||||||||||| || ||| || |||||||||||||||||    
T  34519426 agagagagggtgcttccatagccaccattctccataggcacccaaatattttactccataat 34519487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 443 - 531
Target Start/End: Original strand, 4905063 - 4905150
Alignment:
Q  443 tctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||| ||||||||||||| | ||||| ||||||| ||| ||||||||||||||||||| || || | |||||||||||||||| |||||    
T  4905063 tctaaatcattaattttacg-taatatttaataagcattaattttctccaatccagcatctcaagagaaattattaaataggtcccaca 4905150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 471 - 531
Target Start/End: Complemental strand, 33037476 - 33037416
Alignment:
Q  471 taataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| || || |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  33037476 taataagcaccacttttctccaacccagcacctcaaaataaattattaaataggttccaca 33037416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 35015870 - 35015990
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||||||||| | || ||  |||||||| ||||||| ||| | ||||  |||||||| ||||  ||||||  | || |    
T  35015870 agagagagggtgcttccatagccaccattctctatagccatccatatattatactccacaatgagggtgcctatttaatatggtgctaaatagatgaaac 35015969  T
Q  710 acccaccattgtggatggtct 730  Q
    |||||||||||||||| ||||    
T  35015970 acccaccattgtggatagtct 35015990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 531
Target Start/End: Original strand, 34519278 - 34519345
Alignment:
Q  464 taatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||| ||||||| || |||||||||||| |||||||||| |||| |||||||||||||||| |||||    
T  34519278 taatagttaataagcaccaattttctccagtccagcacctcaaaagaaattattaaataggtcccaca 34519345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 733
Target Start/End: Original strand, 4167291 - 4167413
Alignment:
Q  611 gagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagca 710  Q
    ||||||| |||||||||||| |||  ||||||| |  |||||| ||||| ||||||||||| | ||||| |||||||| ||||  |||||| || || ||    
T  4167291 gagagagagtgcttccatagtcactcttctccataatcactcaaatattatactccataatgagggtgtctatttaatatggtgctaaataggtgaaaca 4167390  T
Q  711 cccaccattgtggatggtctaag 733  Q
    | ||| ||||||||||| |||||    
T  4167391 cacactattgtggatggcctaag 4167413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 446 - 525
Target Start/End: Original strand, 35015704 - 35015783
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||| | |||||| ||||||||||||||||||   ||||||||||| ||| ||||| |||| |||||| |||||||||    
T  35015704 acatcacttattttatggtaatacttaataaacactcattttctccaacccatcaccttaaaagaaattactaaataggt 35015783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 734
Target Start/End: Complemental strand, 1911100 - 1910959
Alignment:
Q  593 ggaccaataaaaaataa-agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtg 691  Q
    ||||| || |||||||| |||||||| ||| ||| |||||||| |||||||  || ||| ||| |||| |||| || ||||  ||||| |||||||| |     
T  1911100 ggacccatgaaaaataagagagagagggtgattctatagccactattctccgtagccacccatgtattatacttcacaatag-ggtgtctatttaatata 1911002  T
Q  692 gtattaaataagttaagcacccaccattgtggatggtctaagt 734  Q
    ||  |||||| || |||||||||||||| ||||||||||||||    
T  1911001 gtgctaaataggtgaagcacccaccattatggatggtctaagt 1910959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 1706541 - 1706661
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||| ||||||||||||  || ||| ||| |||| |||||||||||   ||||  |||||||||||||    ||||  | ||||    
T  1706541 agagagagggtgcttccataaccaccattctccgtagccacccatgtattatactccataatgggggtgcctatttaatgtggtgccgaatagatgaagc 1706640  T
Q  710 acccaccattgtggatggtct 730  Q
    ||||||||||||  |||||||    
T  1706641 acccaccattgttaatggtct 1706661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 531
Target Start/End: Original strand, 4163278 - 4163345
Alignment:
Q  464 taatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||||| ||| || |||||||||| || ||||||||  |||| |||||||||||||||| |||||    
T  4163278 taatacttactaagcaccaattttctctaacccagcaccataaaagaaattattaaataggtcccaca 4163345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 47066133 - 47066182
Alignment:
Q  681 tatttaatgtggtattaaataagttaagcacccaccattgtggatggtct 730  Q
    ||||||||||||| ||||||| |||||||| |||||||| || |||||||    
T  47066133 tatttaatgtggtgttaaataggttaagcatccaccattatgaatggtct 47066182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 9032683 - 9032803
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    ||||||||  |||||||||||||||| ||||||| || ||| ||| |||| |||||||||||| |||||  ||||||||||||| ||||||| || ||||    
T  9032683 agagagaggatgcttccatagccacccttctccatagccacccatgtattatactccataatagaggtgcctatttaatgtggtgttaaataggtgaagc 9032782  T
Q  710 acccaccattgtggatggtct 730  Q
    |||||||||| ||||||||||    
T  9032783 acccaccattttggatggtct 9032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 441 - 531
Target Start/End: Complemental strand, 5732848 - 5732758
Alignment:
Q  441 tgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| |||||||||||||  |||||||||||| ||||  |||||||||||||||||||||| |||| ||||||||||||| || |||||    
T  5732848 tgtctatatcattaattttacagtaatacttaattaacactaattttctccaatccagcaccttaaaaaaaattattaaataagtcccaca 5732758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 733
Target Start/End: Complemental strand, 9548571 - 9548459
Alignment:
Q  620 tgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccatt 719  Q
    |||||||||||||||| |||| || || |||||||||| ||||||||| |||   ||||| |||||||||||||  |||||| |||||||| ||||||||    
T  9548571 tgcttccatagccacccttcttcataggcactcatatagtttactccacaatgg-ggtgtctatttaatgtggtgctaaataggttaagcatccaccatt 9548473  T
Q  720 gtggatggtctaag 733  Q
    || |||||||||||    
T  9548472 gtagatggtctaag 9548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 730
Target Start/End: Complemental strand, 19494850 - 19494730
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||| ||| ||||||||||||||||||||||||| || ||| |||||||| ||||||| |||   ||||  |||||||| ||||| ||||||  | ||||    
T  19494850 agagggagagtgcttccatagccaccattctccatagtcacccatatattatactccacaatgggggtgcctatttaatatggtactaaatagatgaagc 19494751  T
Q  710 acccaccattgtggatggtct 730  Q
    | ||| |||||||||||||||    
T  19494750 atccatcattgtggatggtct 19494730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 531
Target Start/End: Original strand, 9032468 - 9032593
Alignment:
Q  406 agcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaa 505  Q
    |||||| ||||||||||||||| |||   | | |||||| |||||| | ||||||  |||||||||||||| ||  |||||||||||| ||| ||||| |    
T  9032468 agcaccctaaattggatgcttacattaaatttgtatgtccacatcacttattttaccgtaatacttaataagcactaattttctccaacccaacacctta 9032567  T
Q  506 aaataaattattaaataggttccaca 531  Q
    ||| | |||||||||||||| |||||    
T  9032568 aaagagattattaaataggtcccaca 9032593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 439 - 527
Target Start/End: Complemental strand, 14170050 - 14169962
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttc 527  Q
    |||||| |||||| | |||||| | ||||| || |||||||| |||||||||||| ||| ||||| |||| ||||||||||||||||||    
T  14170050 tatgtcgacatcactcattttatgataatatttgataaacataaattttctccaacccaacaccttaaaagaaattattaaataggttc 14169962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 7315193 - 7315251
Alignment:
Q  467 tacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||||||| || ||||||||||||||||| ||||| |||| ||||||||||||||||    
T  7315193 tacttaataagcaccaattttctccaatccaacaccttaaaagaaattattaaataggt 7315251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 610 - 730
Target Start/End: Complemental strand, 38935148 - 38935027
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataat-aaaggtgtttatttaatgtggtattaaataagttaag 708  Q
    |||||||  |||||| |||| ||||||||||||  |||||| |||||||| ||||||| ||| |  |||||||||||||||||||  |||||| || |||    
T  38935148 agagagaaggtgctttcataaccaccattctccctagacacccatatattatactccacaatgaggggtgtttatttaatgtggtgctaaatatgtgaag 38935049  T
Q  709 cacccaccattgtggatggtct 730  Q
    || ||| |  ||||||||||||    
T  38935048 catccatcgatgtggatggtct 38935027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 725
Target Start/End: Original strand, 7315339 - 7315456
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaata--agttaa 707  Q
    |||||||| |||||||||||| |||| ||||||| || ||| ||| |||| ||||||| ||| | ||||| |||||||  ||||  ||||||   || ||    
T  7315339 agagagagggtgcttccatagtcacccttctccatagccacccatgtattatactccacaatgagggtgtctatttaacatggtgctaaatatgtgtgaa 7315438  T
Q  708 gcacccaccattgtggat 725  Q
    ||||||||||||||||||    
T  7315439 gcacccaccattgtggat 7315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 525
Target Start/End: Complemental strand, 9548723 - 9548612
Alignment:
Q  413 taaattggatgcttaaattggttctc-tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataa 511  Q
    |||||||| ||||||||| ||| ||| | |||||| ||||||||| |||  |||||||| ||||||||  |||||||||||| ||| || || |||| ||    
T  9548723 taaattgggtgcttaaatgggt-ctcatgtgtctatatcattaatcttatagtaatactcaataaacactaattttctccaacccaaca-ctcaaaaaaa 9548626  T
Q  512 attattaaataggt 525  Q
    ||||||||||||||    
T  9548625 attattaaataggt 9548612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 730
Target Start/End: Complemental strand, 5732620 - 5732557
Alignment:
Q  667 ataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtct 730  Q
    ||||||||||||  |||||||||||||  |||||| ||||||||||||  ||| ||||||||||    
T  5732620 ataataaaggtgcctatttaatgtggtgctaaataggttaagcacccattattatggatggtct 5732557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 730
Target Start/End: Complemental strand, 5803138 - 5803075
Alignment:
Q  667 ataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtct 730  Q
    ||||||||||||  |||||||||||||  |||||| ||||||||||||  ||| ||||||||||    
T  5803138 ataataaaggtgcctatttaatgtggtgctaaataggttaagcacccattattatggatggtct 5803075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 404 - 523
Target Start/End: Original strand, 44515851 - 44515969
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    ||||||||||||||||| || |||||||| |||  ||||||||||||||| |||||| ||||||||||||||| ||   ||||||||||| |||||||||    
T  44515851 agagcaccataaattgggtgtttaaattgattca-tatgtctacatcattcattttacggtaatacttaataatcactgattttctccaacccagcacct 44515949  T
Q  504 aaaaataaattattaaatag 523  Q
     |||| ||||||||||||||    
T  44515950 taaaagaaattattaaatag 44515969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 610 - 734
Target Start/End: Complemental strand, 36755230 - 36755106
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||| ||||||| || ||| |||||||| ||||||| |||  |||||| |||||||| ||||  ||||||  | ||||    
T  36755230 agagagagggtgcttccatagccacccttctccatagccacccatatattatactccacaatggaggtgtctatttaatatggtgctaaatagatgaagc 36755131  T
Q  710 acccaccattgtggatggtctaagt 734  Q
    |||||||||||||||||||| ||||    
T  36755130 acccaccattgtggatggtccaagt 36755106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 610 - 734
Target Start/End: Complemental strand, 56192332 - 56192208
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| |||||| |||||||||| ||||| | |||||| |||||||||||||||| ||    ||||  ||||||||||||| ||||||| || ||||    
T  56192332 agagagagggtgctttcatagccacccttctctatagacacccatatattttactccacaacgggggtgcctatttaatgtggtgttaaataggtaaagc 56192233  T
Q  710 acccaccattgtggatggtctaagt 734  Q
    ||||||||||||||||| |||||||    
T  56192232 acccaccattgtggatgatctaagt 56192208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 610 - 732
Target Start/End: Complemental strand, 16529948 - 16529826
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||  ||||||||||||||||||||||||| || ||| ||| |||| ||||||| |||   ||||  |||||||||||||  |||||| || ||||    
T  16529948 agagagatggtgcttccatagccaccattctccatagccacccatgtattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaagc 16529849  T
Q  710 acccaccattgtggatggtctaa 732  Q
    |||||||||||||||||||||||    
T  16529848 acccaccattgtggatggtctaa 16529826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 440 - 531
Target Start/End: Original strand, 46433028 - 46433119
Alignment:
Q  440 atgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||| ||||| ||||| ||||  ||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  46433028 atgtttacattattaaatttacagtaatacttaataagtatcaattttctccaatccaacacctcaaaataaattattaaataggtcccaca 46433119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 645 - 730
Target Start/End: Original strand, 13205687 - 13205772
Alignment:
Q  645 agacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtct 730  Q
    |||||| ||||||||||||| || |||  || ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  13205687 agacacccatatattttacttcacaatggagatgtctatttaatgtggtactaaataggttaagcacccaccattgtggatggtct 13205772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 402 - 531
Target Start/End: Original strand, 55692849 - 55692978
Alignment:
Q  402 atagagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcac 501  Q
    |||||||||| |||||||| || ||||||||  |   |||||| |||||| | ||||||  ||||||||| ||||||| ||||||||||||| ||||||     
T  55692849 atagagcaccttaaattgggtgtttaaattgaattcatatgtccacatcactcattttactgtaatacttgataaacaccaattttctccaacccagcat 55692948  T
Q  502 ctaaaaataaattattaaataggttccaca 531  Q
    || |||| |||||||||||||||| |||||    
T  55692949 cttaaaagaaattattaaataggtcccaca 55692978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 531
Target Start/End: Complemental strand, 56192490 - 56192413
Alignment:
Q  454 aattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||| ||||||||||||||| || ||||||||||||| ||| ||||| |||| ||||||||||||||||||||||    
T  56192490 aattttatggtaatacttaataagcaccaattttctccaacccaacacctcaaaagaaattattaaataggttccaca 56192413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 531
Target Start/End: Original strand, 3533842 - 3533934
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| |||||| | |||||| ||||||||||||||| || || |||||||||| ||| ||||| ||||||||||||||||||||| |||||    
T  3533842 tatgtccacatcactcattttacggtaatacttaataagcaccatttttctccaacccaacacctcaaaataaattattaaataggtcccaca 3533934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 439 - 522
Target Start/End: Original strand, 45548992 - 45549075
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaata 522  Q
    |||||| |||||| | |||||| ||||||||||||||| || || |||||||||| ||||||||| ||||||||||||||||||    
T  45548992 tatgtccacatcactcattttacggtaatacttaataagcaccacttttctccaacccagcaccttaaaataaattattaaata 45549075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 593 - 719
Target Start/End: Original strand, 3232730 - 3232856
Alignment:
Q  593 ggaccaataaaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtgg 692  Q
    ||||||| ||||||| ||||||||| ||| ||||||| ||||| ||||||| || ||| ||||||||||||| || ||  | |||| | |||||||||||    
T  3232730 ggaccaacaaaaaatgaagagagagggtgattccataaccacccttctccataggcacccatatattttacttcacaacgagggtgctaatttaatgtgg 3232829  T
Q  693 tattaaataagttaagcacccaccatt 719  Q
    |  |||||| ||||| |||||||||||    
T  3232830 tgctaaataggttaatcacccaccatt 3232856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 29844962 - 29845023
Alignment:
Q  464 taatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    ||||||||||||||||||| |||||||||| |||||| || |||||||||||||||||||||    
T  29844962 taatacttaataaacatcacttttctccaacccagcatctcaaaataaattattaaataggt 29845023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 531
Target Start/End: Original strand, 36284446 - 36284573
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||||| |||||||| ||||||||| ||| | || | |||| |||||||||||||  |||| |||||||||  | |||||||||||||  || ||| |    
T  36284446 agagcaccttaaattgggtgcttaaatgggtcccctgtatctatatcattaattttactgtaacacttaataagaaccaattttctccaacacaacactt 36284545  T
Q  504 aaaaataaattattaaataggttccaca 531  Q
     |||| |||||||||||||||| |||||    
T  36284546 caaaagaaattattaaataggtcccaca 36284573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 37997215 - 37997100
Alignment:
Q  416 attggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaatta 515  Q
    ||||| || |||||| |||  |||||||| ||||||||||||||| | ||||||||||||| || ||||||||| ||| |||||| || |||| ||||||    
T  37997215 attgggtgtttaaatgggtcatctatgtccacatcattaattttacgataatacttaataagcaccaattttcttcaacccagcatctcaaaagaaatta 37997116  T
Q  516 ttaaataggttccaca 531  Q
    | ||||| || |||||    
T  37997115 taaaatatgtcccaca 37997100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 438 - 520
Target Start/End: Original strand, 37182423 - 37182505
Alignment:
Q  438 ctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaa 520  Q
    ||||||| ||||||| ||||||| | ||||||||||||| |||||||||| ||||||| || |||| |||| |||||||||||    
T  37182423 ctatgtccacatcatcaattttatgataatacttaataagcatcaattttttccaatcgagtacctcaaaagaaattattaaa 37182505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 447 - 531
Target Start/End: Original strand, 13205505 - 13205589
Alignment:
Q  447 catcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||||||||||| |||||| |||| ||| ||| |||||||||||| ||| ||||| |||| ||||||||||||| || |||||    
T  13205505 catcattaattttacggtaatccttactaagcattaattttctccaacccaacacctcaaaagaaattattaaataagtcccaca 13205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 38476244 - 38476364
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||  ||||||||||| ||||| ||||||| |  ||| |||||||| |||| ||||||   ||||| |||||||||||||  |||||| || ||||    
T  38476244 agagagaacgtgcttccataaccacctttctccataaccacccatatattatacttcataatgggggtgtctatttaatgtggtgctaaataggtgaagc 38476343  T
Q  710 acccaccattgtggatggtct 730  Q
    |||||||||| | ||||||||    
T  38476344 acccaccattatagatggtct 38476364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 525
Target Start/End: Original strand, 54183872 - 54183994
Alignment:
Q  402 atagagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcac 501  Q
    |||||||||| |||||| | |||||||||  ||||  |||||||||| || | ||||||   ||||| ||||||| |||||||||| | || |||||||     
T  54183872 atagagcaccctaaattaggtgcttaaatgagttccttatgtctacaacactcattttactataatatttaataagcatcaatttttttcattccagcat 54183971  T
Q  502 ctaaaaataaattattaaataggt 525  Q
    ||||||| ||||||||||||||||    
T  54183972 ctaaaaa-aaattattaaataggt 54183994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 602 - 734
Target Start/End: Original strand, 3534006 - 3534139
Alignment:
Q  602 aaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaata 701  Q
    |||||| ||||||||| |||||| ||||||||||  |||||| || ||| |||||||| | ||||| |||   ||||  ||||||||||| |  ||||||    
T  3534006 aaaaatgaagagagagagtgctttcatagccacccatctccatagccacccatatattattctccacaatgggggtgcctatttaatgtgatgctaaata 3534105  T
Q  702 agttaagca-cccaccattgtggatggtctaagt 734  Q
     || ||||| |||||| |||||||||||||||||    
T  3534106 ggtgaagcaccccaccgttgtggatggtctaagt 3534139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 531
Target Start/End: Original strand, 15024521 - 15024582
Alignment:
Q  470 ttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||||||||||||||||| || |||| |||  ||||||||||||||||||||| |||||    
T  15024521 ttaataaacatcaattttctctaacccagtaccacaaaataaattattaaataggtcccaca 15024582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 525
Target Start/End: Original strand, 12832260 - 12832381
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||| | |||||||| |||||||||||  |   |||||| |||||| | || |||  |||||||||| ||| || |||||||||||   ||| |||||    
T  12832260 agagcatcctaaattgggtgcttaaattgaattcatatgtccacatcactcatgttaccgtaatacttagtaagcaccaattttctccggcccaacacct 12832359  T
Q  504 aaaaataaattattaaataggt 525  Q
    ||||| ||||||||||||||||    
T  12832360 aaaaagaaattattaaataggt 12832381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 531
Target Start/End: Complemental strand, 16530113 - 16530029
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| | ||||||  |||||||||||||| || ||||||||||||| ||||| ||| |||| ||||||||||||| || |||||    
T  16530113 acatcactcattttaccgtaatacttaataagcaccaattttctccaa-ccagctccttaaaagaaattattaaataagtcccaca 16530029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 691
Target Start/End: Original strand, 36284654 - 36284735
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtg 691  Q
    |||||||| |||||||||||| |||| ||||||| ||| || ||||| |||||||||| |||  |||||  |||||||||||    
T  36284654 agagagagggtgcttccataggcacccttctccatagatacccatatgttttactccacaatggaggtgcctatttaatgtg 36284735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 601 - 733
Target Start/End: Complemental strand, 37997032 - 37996900
Alignment:
Q  601 aaaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaat 700  Q
    ||||||| ||||||||| |||||||| |||||||| | ||| |    ||  |||||||| ||||||| ||| | | ||| |||||||||||||  |||||    
T  37997032 aaaaaatgaagagagagagtgcttccgtagccaccctcctcgattagcaaccatatattatactccacaatgaggatgtctatttaatgtggtgctaaat 37996933  T
Q  701 aagttaagcacccaccattgtggatggtctaag 733  Q
    |    ||||| ||||||||||||||||||||||    
T  37996932 agaagaagcatccaccattgtggatggtctaag 37996900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 732
Target Start/End: Original strand, 29845163 - 29845214
Alignment:
Q  681 tatttaatgtggtattaaataagttaagcacccaccattgtggatggtctaa 732  Q
    ||||||||||||| ||||||| ||  || |||||||||||||||||||||||    
T  29845163 tatttaatgtggtgttaaataggtggaggacccaccattgtggatggtctaa 29845214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 3232628 - 3232678
Alignment:
Q  481 caattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||||||||||||| ||| | |||| |||||||||||||||| |||||    
T  3232628 caattttctccaatccaacacttcaaaagaaattattaaataggtcccaca 3232678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 609 - 727
Target Start/End: Original strand, 28992628 - 28992745
Alignment:
Q  609 aagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaag 708  Q
    ||||||||| || ||||||||| |||| ||||||  | ||||||| ||||| ||||||| |||   ||||| |||||| | ||||  |||||| || |||    
T  28992628 aagagagagagtacttccatagtcacccttctccgtacacactcaaatattatactccacaatgg-ggtgtctatttagtatggtgctaaataggtgaag 28992726  T
Q  709 cacccaccattgtggatgg 727  Q
    ||||||| |||||||||||    
T  28992727 cacccacaattgtggatgg 28992745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 727
Target Start/End: Original strand, 55693063 - 55693180
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||| ||||| | || |||  ||  ||| ||||||| ||| ||| ||  |||||||||||||  ||||||  | ||||    
T  55693063 agagagagggtgcttccatagccacccttctctatagtcaccaatgcattatactccacaatgaagatgcctatttaatgtggtgctaaatagatgaagc 55693162  T
Q  710 acccaccattgtggatgg 727  Q
    | ||| ||||||||||||    
T  55693163 atccatcattgtggatgg 55693180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 609 - 735
Target Start/End: Complemental strand, 41407315 - 41407189
Alignment:
Q  609 aagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaag 708  Q
    ||||||||| ||||||||||||||||||||||| | || ||| |||||||||||||||| ||| | ||||  |||||||| |||| |||||||  | |||    
T  41407315 aagagagagggtgcttccatagccaccattctctatagccacccatatattttactccacaatgatggtgcctatttaatatggtgttaaatagatgaag 41407216  T
Q  709 cacccaccattgtggatggtctaagtt 735  Q
    |||||| ||||||||||||| ||||||    
T  41407215 cacccatcattgtggatggtttaagtt 41407189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 531
Target Start/End: Original strand, 6148238 - 6148330
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| |||||| | |||||| ||||||| ||||||| |||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||    
T  6148238 tatgtccacatcacttattttacggtaatatttaataagcatcaattttctacaacccagcaccttaaaagaaattattaaataggtcccaca 6148330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 415 - 531
Target Start/End: Complemental strand, 42845475 - 42845359
Alignment:
Q  415 aattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaatt 514  Q
    |||||||||||||||| ||| | | || | ||||| ||||| |||| ||||||| |||||||  ||||||||||||  |||||||| || ||||||||||    
T  42845475 aattggatgcttaaatgggtcccccatatttacattattaaatttacggtaatatttaataagtatcaattttctcacatccagcatctcaaaataaatt 42845376  T
Q  515 attaaataggttccaca 531  Q
    ||||||||||| |||||    
T  42845375 attaaataggtcccaca 42845359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 3692162 - 3692079
Alignment:
Q  437 tctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaa 520  Q
    |||||||| | |||| | |||||| |||||||||||||||||||||||||||||||||| || |||| |||| |||||||||||    
T  3692162 tctatgtccatatcacttattttacggtaatacttaataaacatcaattttctccaatctagaacctcaaaagaaattattaaa 3692079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 610 - 733
Target Start/End: Complemental strand, 8845675 - 8845552
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||| | ||||| |  ||| ||||| || ||||||| |||  | |||  |||||||||||||  |||||| || ||||    
T  8845675 agagagagggtgcttccatagccaccctcctccataagcacccatatgttatactccacaatggaagtgcctatttaatgtggtgctaaataggtaaagc 8845576  T
Q  710 acccaccattgtggatggtctaag 733  Q
    ||||||||||||||||||||||||    
T  8845575 acccaccattgtggatggtctaag 8845552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 734
Target Start/End: Original strand, 6148411 - 6148535
Alignment:
Q  608 aaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaa 707  Q
    |||||||||| ||||||||| ||||| | ||||||| |||||| |||||||| |||| || |||  || || ||||| ||| |||| ||||||| || ||    
T  6148411 aaagagagagggtgcttcca-agccatccttctccatagacacccatatattatacttcacaatggagatgcttatt-aatatggtgttaaataggtgaa 6148508  T
Q  708 gcacccaccattgtggatggtctaagt 734  Q
    |||||||||||||||||||||||||||    
T  6148509 gcacccaccattgtggatggtctaagt 6148535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 439 - 523
Target Start/End: Complemental strand, 20765890 - 20765806
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||||| |||||| | ||||||  |||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||||||||||    
T  20765890 tatgtccacatcactcattttaccgtaatacttaataagcatcaattttctccaacccagcaccttaaaagaaaatattaaatag 20765806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 612 - 734
Target Start/End: Complemental strand, 7186302 - 7186180
Alignment:
Q  612 agagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcac 711  Q
    |||||| ||||||||||||||||| ||||||| || ||| |||||||| | ||||| ||| |  |||  ||||||||  |||  |||||| || ||||||    
T  7186302 agagagggtgcttccatagccacccttctccatagccacccatatattattctccacaatgagagtgcctatttaatacggtgctaaatatgtgaagcac 7186203  T
Q  712 ccaccattgtggatggtctaagt 734  Q
    ||||||||||| |||||||||||    
T  7186202 ccaccattgtgtatggtctaagt 7186180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 531
Target Start/End: Original strand, 1597942 - 1598031
Alignment:
Q  442 gtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||||||| |||||||| ||||||| ||||||| || |||| |||||||| | | ||||| |||| |||||||||||||||| |||||    
T  1597942 gtctacatcactaattttacggtaatatttaataagcaccaatattctccaaccgaacacctcaaaagaaattattaaataggtcccaca 1598031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 527
Target Start/End: Original strand, 3346622 - 3346735
Alignment:
Q  414 aaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaat 513  Q
    ||||||||||||||||| |||  ||| |||  |||||| | ||| || |||| ||||||||||||| || |||||| ||| ||| ||||| |||| ||||    
T  3346622 aaattggatgcttaaatgggtcatctgtgttcacatcactcattatacggtactacttaataaacaccagttttcttcaacccaacacctcaaaagaaat 3346721  T
Q  514 tattaaataggttc 527  Q
    ||||||||||||||    
T  3346722 tattaaataggttc 3346735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 446 - 521
Target Start/End: Complemental strand, 7186470 - 7186395
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaat 521  Q
    |||||| | |||||| ||||||||||||||| || || |||||||||| ||| ||||| |||||||||||||||||    
T  7186470 acatcactcattttacggtaatacttaataagcaccacttttctccaacccaacacctcaaaataaattattaaat 7186395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 531
Target Start/End: Complemental strand, 43429645 - 43429518
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||| |||||||||| ||||||||| ||     | ||| |||||||||||||||| |||| ||| |||||   | ||||||||||||| ||| |||||    
T  43429645 agagcatcataaattgggtgcttaaataggccacatgtgtttacatcattaattttacggtagtacataataggtaccaattttctccaacccaacacct 43429546  T
Q  504 aaaaataaattattaaataggttccaca 531  Q
     |||| ||||||||||||| ||||||||    
T  43429545 caaaagaaattattaaataagttccaca 43429518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 730
Target Start/End: Complemental strand, 43429431 - 43429318
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||| ||||||||| ||||||| || ||| |||||||||||||||| |||   ||||  ||||||||||||       |  |||||||    
T  43429431 agagagagagtgcttctatagccacccttctccataggcacccatatattttactccaaaatgggggtgcctatttaatgtgg-------tgcgttaagc 43429339  T
Q  710 acccaccattgtggatggtct 730  Q
    |||||||||||||||||||||    
T  43429338 acccaccattgtggatggtct 43429318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 610 - 671
Target Start/End: Complemental strand, 42845320 - 42845259
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataat 671  Q
    |||| ||| ||||||||||||||||||||||||| || ||| ||||||| ||||||||||||    
T  42845320 agagggagggtgcttccatagccaccattctccataggcacccatatatattactccataat 42845259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 732
Target Start/End: Original strand, 3346811 - 3346923
Alignment:
Q  620 tgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccatt 719  Q
    ||||||| |||||||| || |||| |  ||| |||||||| ||||| ||||| ||| ||  | |||||||||||| ||||||| | ||||||  ||||||    
T  3346811 tgcttccttagccacctttgtccataagcacccatatattatactctataatgaagatgcatgtttaatgtggtactaaataaatgaagcacttaccatt 3346910  T
Q  720 gtggatggtctaa 732  Q
    |||||||||||||    
T  3346911 gtggatggtctaa 3346923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 404 - 531
Target Start/End: Original strand, 43417671 - 43417797
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    ||||||||  ||||||| ||||||||| |||||||||  || |||||| | |||||| |||||| ||||||||||| | ||||| | ||| ||| |||||    
T  43417671 agagcacctcaaattgggtgcttaaatgggttctctacatccacatcactcattttacggtaattcttaataaacaccgatttttttcaacccaacacct 43417770  T
Q  504 aaaaataaattattaaataggttccaca 531  Q
      ||  |||||||||||||||| |||||    
T  43417771 -caacgaaattattaaataggtcccaca 43417797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 8845832 - 8845771
Alignment:
Q  462 ggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatagg 524  Q
    |||||||||||||||||| | ||||||||||| | ||||||| |||| |||||||||||||||    
T  8845832 ggtaatacttaataaacaccgattttctccaacctagcacctcaaaa-aaattattaaatagg 8845771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 726
Target Start/End: Original strand, 1598113 - 1598229
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||| |||||  || | |||   || |  |||||||| ||||  |||||| |||||||    
T  1598113 agagagagcgtgcttccatagccaccattcttcgtagacactcatacattttgttcgacaatgggggcgcctatttaatatggtgctaaataggttaagc 1598212  T
Q  710 acccaccattgtggatg 726  Q
    || || |||||||||||    
T  1598213 actcagcattgtggatg 1598229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 735
Target Start/End: Original strand, 37127652 - 37127767
Alignment:
Q  620 tgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccatt 719  Q
    |||||||||||||||  ||||||| || |||  || |||| ||||||| | | | | ||  |||||||||||||  |||||| || ||||||||||||||    
T  37127652 tgcttccatagccactcttctccatagccacctatttattatactccacagtgaggatgcctatttaatgtggtgataaataggtaaagcacccaccatt 37127751  T
Q  720 gtggatggtctaagtt 735  Q
    ||| || |||||||||    
T  37127752 gtgaatagtctaagtt 37127767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 39949803 - 39949753
Alignment:
Q  443 tctacatcattaattttagggtaatacttaataaacatcaattttctccaa 493  Q
    ||||||||||||||||||  |||||||||||||| ||  ||||||||||||    
T  39949803 tctacatcattaattttatagtaatacttaataagcacaaattttctccaa 39949753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 37127512 - 37127553
Alignment:
Q  482 aattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||||||||||| | ||||||| |||||||||||||||||||    
T  37127512 aattttctccaaccgagcaccttaaaataaattattaaatag 37127553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 413 - 529
Target Start/End: Original strand, 2559 - 2675
Alignment:
Q  413 taaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaa 512  Q
    |||||||| |||||||||||  |   |||||| |||||| | ||||||  |||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  2559 taaattgggtgcttaaattgaattcatatgtccacatcactcattttaccgtaatacttaataagcatcaattttctccaatccagcaccttaaaagaaa 2658  T
Q  513 ttattaaataggttcca 529  Q
    |||||||||||| ||||    
T  2659 ttattaaatagggtcca 2675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 404 - 531
Target Start/End: Complemental strand, 33016698 - 33016571
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||||| |||||||| || |||||| | | |  | |||||||||||||||||||| | ||||| || ||||| ||||||||||||||| ||| |||||    
T  33016698 agagcaccttaaattgggtgtttaaatggatcccttgtgtctacatcattaattttatgataatatttgataaatatcaattttctccaacccaacacct 33016599  T
Q  504 aaaaataaattattaaataggttccaca 531  Q
     |||| ||||||||||||||||||||||    
T  33016598 caaaagaaattattaaataggttccaca 33016571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 521
Target Start/End: Original strand, 16255237 - 16255354
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||||| | |||||| ||||||||| | | | |||||||||  || || |||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  16255237 agagcaccctgaattgggtgcttaaatagatcccctatgtctatctcgtttattttacggtaatacttaataagcatcaattttctccaacccagcacct 16255336  T
Q  504 aaaaataaattattaaat 521  Q
     |||| ||||||||||||    
T  16255337 caaaagaaattattaaat 16255354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 441 - 525
Target Start/End: Complemental strand, 29701239 - 29701155
Alignment:
Q  441 tgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||| || |||| |||||||||| |||||    
T  29701239 tgtctacatcattaatttttcggtaatacttaataaacaccaattttctccaacccagcatcttaaaagaaattattaactaggt 29701155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 531
Target Start/End: Complemental strand, 14625218 - 14625151
Alignment:
Q  464 taatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  14625218 taatacttaataaacaccatttttctccaatccagcacctcaaaataaattattaaataggtcccaca 14625151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 406 - 525
Target Start/End: Original strand, 50378084 - 50378203
Alignment:
Q  406 agcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaa 505  Q
    |||||| |||| | ||||||||||||  ||   |||||| |||||| | ||| || ||||| ||||||||| || ||||||||||||||||||||||| |    
T  50378084 agcaccttaaactagatgcttaaattaatttcatatgtcaacatcactcattgtacggtaacacttaataagcaccaattttctccaatccagcacctca 50378183  T
Q  506 aaataaattattaaataggt 525  Q
    ||| ||||||||||||||||    
T  50378184 aaagaaattattaaataggt 50378203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 523
Target Start/End: Complemental strand, 39923525 - 39923443
Alignment:
Q  441 tgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||| ||||||||||||||| |||||||||||||||| | |||||||||| || ||| ||||| |||| ||||||||||||||    
T  39923525 tgtccacatcattaattttacggtaatacttaataaataccaattttctcaaacccaacacctcaaaagaaattattaaatag 39923443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 414 - 531
Target Start/End: Original strand, 50377717 - 50377834
Alignment:
Q  414 aaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaat 513  Q
    ||||||| |||||||||  ||  | |||||| ||||||   |||||| |||||||||||||||  | ||||||||||||| ||||||||| |||| ||||    
T  50377717 aaattgggtgcttaaatgagtcttttatgtccacatcacccattttacggtaatacttaataagtaccaattttctccaacccagcacctcaaaagaaat 50377816  T
Q  514 tattaaataggttccaca 531  Q
    |||||||||||| |||||    
T  50377817 tattaaataggtcccaca 50377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 406 - 526
Target Start/End: Original strand, 8259243 - 8259363
Alignment:
Q  406 agcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaa 505  Q
    |||||| |||| ||||||||||||||  ||   ||||| ||||||| | ||||||  |||||||||||| || || |||||||| ||||||||||||| |    
T  8259243 agcaccttaaaatggatgcttaaattaatttcttatgtttacatcactcattttacagtaatacttaatcaaaattaattttctacaatccagcacctca 8259342  T
Q  506 aaataaattattaaataggtt 526  Q
    ||| ||||||| |||||||||    
T  8259343 aaagaaattatcaaataggtt 8259363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 524
Target Start/End: Complemental strand, 51776858 - 51776750
Alignment:
Q  416 attggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaatta 515  Q
    ||||||||||||| | ||| |  ||| || ||||||| ||||||| |||||||||| |||| |||||||||||||||| ||| ||||| |||| ||||||    
T  51776858 attggatgcttaagtgggtcccttatatccacatcatcaattttacggtaatacttgataagcatcaattttctccaacccaacacctcaaaagaaatta 51776759  T
Q  516 ttaaatagg 524  Q
    |||| ||||    
T  51776758 ttaactagg 51776750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 446 - 524
Target Start/End: Original strand, 20381054 - 20381132
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatagg 524  Q
    |||||| | ||||||  |||||||||||||| |||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  20381054 acatcactcattttaccgtaatacttaataagcatcaattttctccaacccagcaccttaaaaggaattattaaatagg 20381132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 439 - 525
Target Start/End: Original strand, 25388896 - 25388982
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||| |||||||| ||||||  |||||||||||||| |||||||||| ||||| ||| ||||| |||| |||||| |||||||||    
T  25388896 tatgtccacatcattcattttatcgtaatacttaataagcatcaattttttccaacccaacaccttaaaagaaattactaaataggt 25388982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 729
Target Start/End: Complemental strand, 33016452 - 33016375
Alignment:
Q  652 catatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtc 729  Q
    |||||||||||||||| |||  |||||  |||||||||||||  ||||||||||||||||| |||||||| |||||||    
T  33016452 catatattttactccaaaatggaggtgcctatttaatgtggtgctaaataagttaagcacctaccattgtagatggtc 33016375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 463 - 531
Target Start/End: Complemental strand, 48379724 - 48379656
Alignment:
Q  463 gtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||||||||||||||| |||||||||||| | | ||||| |||| |||||||||||||||| |||||    
T  48379724 gtaatacttaataaacattaattttctccaaccaaacaccttaaaagaaattattaaataggtcccaca 48379656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 446 - 525
Target Start/End: Original strand, 15342690 - 15342769
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||| | ||||||  |||||| |||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||||    
T  15342690 acatcactcattttactgtaatatttaataaacaccaattttcttcaacccagcactttaaaataaattattaaataggt 15342769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 725
Target Start/End: Complemental strand, 47024425 - 47024310
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||| ||| ||||||||| ||||| | || ||  |||||||||||||||| |||  |||||  ||||||||||||| | |||||  ||| ||    
T  47024425 agagagagggtgtttctatagccacctttctctataggcatccatatattttactccacaatggaggtgcctatttaatgtggtgtgaaatagattacgc 47024326  T
Q  710 acccaccattgtggat 725  Q
    ||||||||||||||||    
T  47024325 acccaccattgtggat 47024310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 732
Target Start/End: Complemental strand, 39923342 - 39923243
Alignment:
Q  631 ccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtct 730  Q
    ||||||||||| | |||||||||||||||| ||| ||||||   ||||   |||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  39923342 ccaccattctctatagacactcatatattt-acttcataatgg-ggtgcccatttaatgcggtgttaaataggttaagcacccatcattgtggatggtct 39923245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 609 - 725
Target Start/End: Original strand, 12140879 - 12140995
Alignment:
Q  609 aagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaag 708  Q
    ||||||||| ||| ||||||||||||| ||||| |||| ||| || ||||| ||||||| ||||| | ||  |||| ||| | || ||||||| || ||     
T  12140879 aagagagagggtggttccatagccacccttctcgacaggcacacaaatattatactccacaataaggatgcctattaaatatagtgttaaataggtgaaa 12140978  T
Q  709 cacccaccattgtggat 725  Q
    |||||||||||||||||    
T  12140979 cacccaccattgtggat 12140995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 523
Target Start/End: Original strand, 24120165 - 24120249
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||||| |||||||| |||||| |||||||||||||||  |||| ||||||||||  || || || |||||||||| ||||||||    
T  24120165 tatgtccacatcattcattttacggtaatacttaataagtatcacttttctccaactcaacatctcaaaataaatttttaaatag 24120249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 42693315 - 42693383
Alignment:
Q  454 aattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaata 522  Q
    ||||||| ||||||||||||||| || ||||||||||||| | ||||||| |||| |||||||| ||||    
T  42693315 aattttacggtaatacttaataagcaccaattttctccaacctagcacctcaaaagaaattatttaata 42693383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 734
Target Start/End: Original strand, 25389758 - 25389817
Alignment:
Q  675 ggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtctaagt 734  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||||| |||| |||||||    
T  25389758 ggtgtctatttaatgtggtgctaaataggttaagcacccaccattgttgatgatctaagt 25389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 601 - 688
Target Start/End: Original strand, 50377905 - 50377992
Alignment:
Q  601 aaaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaat 688  Q
    ||||||||||||||||| ||||||||||| ||||| | ||||| || ||| |||||||| ||||| | |||  |||||| ||||||||    
T  50377905 aaaaaataaagagagagagtgcttccataaccaccctcctccataggcacccatatattatactctacaatggaggtgtctatttaat 50377992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 439 - 525
Target Start/End: Original strand, 26450858 - 26450943
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||| |||||| | |||||| | ||||||||||||| || | ||||||||||| ||||||||| |||| |||||||| |||||||    
T  26450858 tatgtccacatcactcattttatgctaatacttaataagcacccattttctccaacccagcacctcaaaa-aaattattgaataggt 26450943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 730
Target Start/End: Complemental strand, 51776664 - 51776543
Alignment:
Q  609 aagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaag 708  Q
    ||||||||| ||| ||||||||||||||| ||||| |  ||  ||||| || |||| |||||||  | ||  |||||||||||||  |||||| || ||     
T  51776664 aagagagagggtgtttccatagccaccatcctccataagcatccatatgttatacttcataatagggttgcctatttaatgtggtgctaaataggtgaaa 51776565  T
Q  709 cacccaccattgtggatggtct 730  Q
    ||||||||||| ||||||||||    
T  51776564 cacccaccattatggatggtct 51776543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 5959197 - 5959268
Alignment:
Q  453 taattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggt 525  Q
    |||||||| ||||||||||| ||| |||| ||||||||||||||| |  || ||| |||||||||||||||||    
T  5959197 taattttacggtaatactta-taagcatcgattttctccaatccaacgtctcaaagtaaattattaaataggt 5959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 732
Target Start/End: Original strand, 8259452 - 8259571
Alignment:
Q  613 gagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacc 712  Q
    ||||| ||||||||||| ||||| ||||||| || ||| |||||||| ||| ||| |||   ||||  |||||||| || |  ||||||  | |||||||    
T  8259452 gagagggtgcttccataaccacccttctccatagccacccatatattataccccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacc 8259551  T
Q  713 caccattgtggatggtctaa 732  Q
    ||||||||| ||||||||||    
T  8259552 caccattgtagatggtctaa 8259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 9693829 - 9693944
Alignment:
Q  416 attggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaatta 515  Q
    ||||| ||||||||| || |  ||||||| |||||||| || ||| ||||||||||||||| || ||||||| | |||  || ||||| | || ||||||    
T  9693829 attgggtgcttaaatgggctacctatgtccacatcattcatcttatggtaatacttaataagcaccaattttattcaacacaacacctcacaagaaatta 9693928  T
Q  516 ttaaataggttccaca 531  Q
      ||||||||||||||    
T  9693929 caaaataggttccaca 9693944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 733
Target Start/End: Original strand, 16255449 - 16255567
Alignment:
Q  614 agagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcaccc 713  Q
    |||| ||||||||||||||||  |||| || || ||| |||||||| |||| |||||| | |||| ||||||||||||||  |||||| || || |||||    
T  16255449 agagggtgcttccatagccactcttctacataggcacccatatattatacttcataatgagggtg-ttatttaatgtggtgctaaataggtgaaacaccc 16255547  T
Q  714 accattgtggatggtctaag 733  Q
    ||  || |||||| ||||||    
T  16255548 acttttatggatgatctaag 16255567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 728
Target Start/End: Complemental strand, 48379521 - 48379474
Alignment:
Q  681 tatttaatgtggtattaaataagttaagcacccaccattgtggatggt 728  Q
    |||||||||||||  |||||| || |||||||||||||||||||||||    
T  48379521 tatttaatgtggtgctaaataggtgaagcacccaccattgtggatggt 48379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 675 - 733
Target Start/End: Original strand, 15342902 - 15342960
Alignment:
Q  675 ggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtctaag 733  Q
    |||| ||||||||||||||  |||||| || |||||||||||||||| |||| ||||||    
T  15342902 ggtgcttatttaatgtggtgctaaataggtgaagcacccaccattgtagatgatctaag 15342960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 693
Target Start/End: Complemental strand, 4085637 - 4085544
Alignment:
Q  600 taaaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggt 693  Q
    |||||||| |||||||||  | |||| ||| | ||  ||||||| |||||| ||||||||||||||||||||  ||||   |||||||||||||    
T  4085637 taaaaaatgaagagagaggatacttcgataactactcttctccatagacacccatatattttactccataatggaggttcatatttaatgtggt 4085544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 406 - 524
Target Start/End: Original strand, 178153 - 178271
Alignment:
Q  406 agcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaa 505  Q
    |||||| |||||||| |||||||||||  |   |||||| |||||| | ||||||  |||||||||||||| ||||||||||||||||||||| |||| |    
T  178153 agcaccctaaattgggtgcttaaattgaattcatatgtccacatcactcattttaccgtaatacttaataagcatcaattttctccaatccagtacctta 178252  T
Q  506 aaataaattattaaatagg 524  Q
    ||| |||||||||||||||    
T  178253 aaagaaattattaaatagg 178271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 439 - 531
Target Start/End: Complemental strand, 825 - 733
Alignment:
Q  439 tatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| |||||||| |||||| ||||||||||||||| || || |||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  825 tatgtccacatcattcattttatggtaatacttaataagcaccatttttctccaacctagcacctcaaaataaattattaaataggtcccaca 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 612 - 730
Target Start/End: Complemental strand, 665 - 547
Alignment:
Q  612 agagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcac 711  Q
    |||||| ||||||||||||||||| ||||||| || ||| |||||||| | ||||| |||   ||||  ||||||||||||| ||||||| || |||||     
T  665 agagagggtgcttccatagccacccttctccatagccacccatatattattctccacaatgggggtgcctatttaatgtggtgttaaataggtgaagcat 566  T
Q  712 ccaccattgtggatggtct 730  Q
     ||||||||||||||||||    
T  565 tcaccattgtggatggtct 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 417 - 525
Target Start/End: Original strand, 29078688 - 29078796
Alignment:
Q  417 ttggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattat 516  Q
    |||| ||||||||| ||| | | ||||||| || ||||| |||| | ||||||||||||| |||||||||||||||||||| ||| | ||||||||||||    
T  29078688 ttgggtgcttaaatgggtcccccatgtctatattattaaatttacgataatacttaataagcatcaattttctccaatccaacacttcaaaataaattat 29078787  T
Q  517 taaataggt 525  Q
    |||||||||    
T  29078788 taaataggt 29078796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 404 - 508
Target Start/End: Original strand, 47864804 - 47864908
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacct 503  Q
    |||||||| |||| ||  ||||||||||  || | ||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||    
T  47864804 agagcaccttaaactgtgtgcttaaattaattttatatgtctacatcactcattttacggtaatacttaataaacatcaattttctccaacccagcacct 47864903  T
Q  504 aaaaa 508  Q
     ||||    
T  47864904 caaaa 47864908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 20935942 - 20936050
Alignment:
Q  415 aattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaatt 514  Q
    ||||||||| |||||| ||| ||| |||||||||| ||||| ||||  ||||||||||||||  | ||||||||| ||||||| ||||| ||||||||||    
T  20935942 aattggatgtttaaataggt-ctccatgtctacattattaaatttatagtaatacttaataagtaccaattttcttcaatccaacacctcaaaataaatt 20936040  T
Q  515 attaaatagg 524  Q
    ||||||||||    
T  20936041 attaaatagg 20936050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 530
Target Start/End: Complemental strand, 20826458 - 20826382
Alignment:
Q  454 aattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccac 530  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||| ||||||| ||||    
T  20826458 aattttacggtaatacttaataagcatcaattttctccaacccaacacctcaaaataaattattgaataggtcccac 20826382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 29078886 - 29079005
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||| ||| |||||||| |||   |||   ||||||||||||| ||||||| |||||||    
T  29078886 agagagagggtgcttccatagccacccttctccatagacacccatgtatattactccacaat-ggggtacctatttaatgtggtgttaaataggttaagc 29078984  T
Q  710 acccaccattgtggatggtct 730  Q
    || || |||||||||||||||    
T  29078985 actcatcattgtggatggtct 29079005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 593 - 727
Target Start/End: Original strand, 19332160 - 19332296
Alignment:
Q  593 ggaccaataaaaaataaagagaga--gtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgt 690  Q
    ||||||| ||||||| ||||||||  | || |||||||||| ||| ||||||| ||| |  |||||| ||||||||| |||| |||||| ||||||| ||    
T  19332160 ggaccaacaaaaaatgaagagagaaagggttcttccatagctacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgt 19332259  T
Q  691 ggtattaaataagttaagcacccaccattgtggatgg 727  Q
    |||  |||||| |||||||| || |||||||||||||    
T  19332260 ggtgctaaataggttaagcatccgccattgtggatgg 19332296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 523
Target Start/End: Complemental strand, 11137911 - 11137808
Alignment:
Q  420 gatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaa 519  Q
    ||||||||| | ||| |||||||||||||||| | ||||||  ||||||||||||||  |  |||||||||||| ||| ||||| |||| || |||||||    
T  11137911 gatgcttaagtgggtcctctatgtctacatcactcattttattgtaatacttaataagtactaattttctccaacccaacacctcaaaagaagttattaa 11137812  T
Q  520 atag 523  Q
    ||||    
T  11137811 atag 11137808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 725
Target Start/End: Original strand, 26952519 - 26952634
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| |||||||||||| |||  || |||| || ||| || ||||| ||||||| |||  |||||| |||||||| ||||  |||||| || ||||    
T  26952519 agagagagggtgcttccatagtcactcttgtccataggcacccaaatattatactccacaatggaggtgtctatttaatatggtgctaaataggtgaagc 26952618  T
Q  710 acccaccattgtggat 725  Q
    ||||||||||||||||    
T  26952619 acccaccattgtggat 26952634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 523
Target Start/End: Original strand, 19554732 - 19554818
Alignment:
Q  437 tctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||||||  ||||||  |||||||  |||||||| |||||  ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  19554732 tctatgttcacatcaccaattttacagtaatactgaataagaatcaattttctccaacccagcacctcaaaagaaattattaaatag 19554818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 728
Target Start/End: Original strand, 20936137 - 20936254
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||| ||||||| || |||  |||||| |||||||| |||   |||   ||||||| |||||||||||||  ||||||    
T  20936137 agagagagggtgcttccatagccacccttctccataggcacctatatatattactccacaat-ggggtacctatttaaagtggtattaaatagattaagc 20936235  T
Q  710 acccaccattgtggatggt 728  Q
    | ||| |||||||||||||    
T  20936236 atccatcattgtggatggt 20936254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 612 - 730
Target Start/End: Complemental strand, 37333290 - 37333172
Alignment:
Q  612 agagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcac 711  Q
    |||||| ||||||||||||||||| ||||||  |  |||  |||| || ||||||| ||| | | ||| |||||||||||||  |||||| || ||||||    
T  37333290 agagagggtgcttccatagccacccttctccgtaagcaccgatatgttatactccacaatgaggatgtctatttaatgtggtgctaaataggtgaagcac 37333191  T
Q  712 ccaccattgtggatggtct 730  Q
    |||||||||||||| ||||    
T  37333190 ccaccattgtggatagtct 37333172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 601 - 726
Target Start/End: Original strand, 26919331 - 26919451
Alignment:
Q  601 aaaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaat 700  Q
    ||||||| ||||||||  |||||||||||||||||||||||||     || |||||||| ||||| | |||   |||| ||||||||| ||||  |||||    
T  26919331 aaaaaatgaagagagaaggtgcttccatagccaccattctcca-----acccatatattatactctacaatgggggtgcttatttaatatggtgctaaat 26919425  T
Q  701 aagttaagcacccaccattgtggatg 726  Q
    | || ||||| |||||||||||||||    
T  26919426 atgtgaagcatccaccattgtggatg 26919451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 47495677 - 47495606
Alignment:
Q  451 attaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatag 523  Q
    |||||||||| ||||||||| ||||| ||||||||||||| ||  ||| ||||||||| ||||||||||||||    
T  47495677 attaattttatggtaatact-aataagcatcaattttctctaactcagtacctaaaaagaaattattaaatag 47495606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 413 - 525
Target Start/End: Complemental strand, 48962507 - 48962395
Alignment:
Q  413 taaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaa 512  Q
    |||||| | ||||||||||  || | ||| |||||||  || |||||| ||||||||||||||| ||   |||||||||||  |||||||| |||| |||    
T  48962507 taaatttggtgcttaaattaattttatatatctacattgttcattttacggtaatacttaataagcactcattttctccaactcagcacctcaaaagaaa 48962408  T
Q  513 ttattaaataggt 525  Q
    |||||||||||||    
T  48962407 ttattaaataggt 48962395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 18090637 - 18090570
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaat 513  Q
    ||||| || |||||| |||||||||||||||  |||| |||||||||| ||||||||| |||||||||    
T  18090637 acatcgttcattttacggtaatacttaataagtatcacttttctccaacccagcacctcaaaataaat 18090570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 455 - 526
Target Start/End: Original strand, 38521859 - 38521929
Alignment:
Q  455 attttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggtt 526  Q
    |||||| ||||||||||||||| |||| ||||||||||| | |||||||||||| ||  |||||||||||||    
T  38521859 attttatggtaatacttaataagcatcgattttctccaacctagcacctaaaaa-aatatattaaataggtt 38521929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 531
Target Start/End: Complemental strand, 10046471 - 10046397
Alignment:
Q  455 attttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    |||||| ||||||||||||||| || || |||||||||| |||||||||   ||||||||||| ||||||| |||||    
T  10046471 attttacggtaatacttaataagcaccacttttctccaacccagcacct--caataaattattcaataggtcccaca 10046397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 531
Target Start/End: Original strand, 19332037 - 19332098
Alignment:
Q  470 ttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccaca 531  Q
    ||||||| || ||||||||||||| ||| ||||| |||| ||||||||||||| || |||||    
T  19332037 ttaataagcaccaattttctccaacccaacacctcaaaagaaattattaaataagtcccaca 19332098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 610 - 730
Target Start/End: Complemental strand, 23418979 - 23418859
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||||||||||||| || ||| |||||||| ||||||| |||   ||||  ||||||||  ||| |||||||  | ||||    
T  23418979 agagagagggtgcttccatagccaccattctccatagccacccatatattatactccacaatgggggtgcctatttaatacggtgttaaatagatgaagc 23418880  T
Q  710 acccaccattgtggatggtct 730  Q
    ||||| |||||||||||||||    
T  23418879 acccatcattgtggatggtct 23418859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 397 - 524
Target Start/End: Complemental strand, 23419186 - 23419059
Alignment:
Q  397 ccatcatagagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatcc 496  Q
    |||| |||||||||| |||||||| ||||||||||  ||   |||||| |||||| | ||||||  |||||||||||||| ||   ||||||||||| ||    
T  23419186 ccataatagagcaccttaaattgggtgcttaaattaatttcatatgtccacatcacttattttacagtaatacttaataagcactgattttctccaaccc 23419087  T
Q  497 agcacctaaaaataaattattaaatagg 524  Q
    ||||||| |||| |||||||||||||||    
T  23419086 agcacctcaaaagaaattattaaatagg 23419059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 9622357 - 9622477
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| |||||||||||| |||| |  |||| |  ||||||||| || ||||||| |||   ||||| |||||||||||||  |||||| || ||||    
T  9622357 agagagagggtgcttccatagtcaccctcttccataagcactcatatgttatactccacaatgggggtgtctatttaatgtggtgctaaataggtgaagc 9622456  T
Q  710 acccaccattgtggatggtct 730  Q
    |||||||||||||||||||||    
T  9622457 acccaccattgtggatggtct 9622477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 730
Target Start/End: Complemental strand, 19279547 - 19279427
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| ||||||||||||||| | ||||||| || ||| ||| |||| ||||||||||     |||| ||||||||||| |  |||||| || ||||    
T  19279547 agagagagggtgcttccatagccatccttctccatagccacccatgtattatactccataaagggtgtgtctatttaatgtgatgctaaataggtgaagc 19279448  T
Q  710 acccaccattgtggatggtct 730  Q
    |||||||||||||||||||||    
T  19279447 acccaccattgtggatggtct 19279427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 619 - 732
Target Start/End: Original strand, 43100930 - 43101042
Alignment:
Q  619 gtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcacccaccat 718  Q
    ||||||||||||||| | | ||||| |  ||| ||||| || ||||||| ||| | |||| ||||||||||||||  |||||| ||||||||||||||||    
T  43100930 gtgcttccatagccaacctactccataagcacccatatgttatactccacaatgagggtgcttatttaatgtggtgctaaataggttaagcacccaccat 43101029  T
Q  719 tgtggatggtctaa 732  Q
    | ||||||||||||    
T  43101030 t-tggatggtctaa 43101042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 732
Target Start/End: Complemental strand, 16561869 - 16561739
Alignment:
Q  602 aaaaataaagagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaata 701  Q
    |||||| ||||||||| ||||||||||||||||  ||||||| ||||||  |||| |||||||||| ||  | ||    |||||||||| ||  ||||||    
T  16561869 aaaaatgaagagagagagtgcttccatagccacatttctccatagacacctatattttttactccacaacgagggctcctatttaatgtagtgctaaata 16561770  T
Q  702 agttaagcacccaccattgtggatggtctaa 732  Q
      |||||| ||||||||||||||| ||||||    
T  16561769 gattaagctcccaccattgtggatcgtctaa 16561739  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 734
Target Start/End: Complemental strand, 19602116 - 19602023
Alignment:
Q  645 agacactcatatattttactccataataaaggtgtttatttaatgtggt----attaaataagttaagcacccaccattgtggatggtctaagt 734  Q
    ||||||||||||||| ||||| ||||  | ||||| |||||||||||||    |||||||| || | |||||||||||||| ||||||||||||    
T  19602116 agacactcatatattatactctataaggagggtgtctatttaatgtggtcctaattaaataggtgacgcacccaccattgtagatggtctaagt 19602023  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 457 - 524
Target Start/End: Original strand, 35377772 - 35377839
Alignment:
Q  457 tttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatagg 524  Q
    |||| ||||||||||| ||| ||  |||||||||||| ||||||||| |||| |||||||||||||||    
T  35377772 tttatggtaatacttagtaagcactaattttctccaacccagcacctcaaaagaaattattaaatagg 35377839  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 10667305 - 10667347
Alignment:
Q  451 attaattttagggtaatacttaataaacatcaattttctccaa 493  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  10667305 attaattttacggtaatacttaataagcatcaattttctccaa 10667347  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 436 - 524
Target Start/End: Original strand, 5422955 - 5423043
Alignment:
Q  436 ctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatagg 524  Q
    |||| |||| ||||||  |||||||  |||||||||||||| || ||||||||||||||| | ||||| |||| || | ||||||||||    
T  5422955 ctctttgtccacatcaccaattttacagtaatacttaataagcaccaattttctccaatctaacacctcaaaagaattaattaaatagg 5423043  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 438 - 518
Target Start/End: Original strand, 9622170 - 9622250
Alignment:
Q  438 ctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattatta 518  Q
    ||||||| ||||||| |||| ||  |||||||||||||| |||||||||||||||| | |||| || |||| | |||||||    
T  9622170 ctatgtccacatcatcaattctaccgtaatacttaataagcatcaattttctccaacctagcatctcaaaagagattatta 9622250  T

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Target: scaffold0127 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 530
Target Start/End: Complemental strand, 23002 - 22910
Alignment:
Q  438 ctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaataggttccac 530  Q
    ||||||||||||||  ||||||| |||| |||||||||| || |||||||||||||   ||||||| |||| |||||||||||||||| ||||    
T  23002 ctatgtctacatcaccaattttacggtactacttaataagcaccaattttctccaacatagcacctgaaaagaaattattaaataggtcccac 22910  T

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Target: scaffold0069 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 446 - 524
Target Start/End: Original strand, 60843 - 60921
Alignment:
Q  446 acatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaattattaaatagg 524  Q
    |||||| | ||||||  |||||||||||||| |||||||||||||||| ||||||||| ||||  ||||||||||||||    
T  60843 acatcactcattttaccgtaatacttaataagcatcaattttctccaacccagcaccttaaaaggaattattaaatagg 60921  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 612 - 730
Target Start/End: Complemental strand, 428400 - 428283
Alignment:
Q  612 agagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagcac 711  Q
    |||||| ||||||||||||||||| ||||||| || ||| ||| |||| ||||||| |||   ||||  |||||||| ||||  |||||| || ||||||    
T  428400 agagagggtgcttccatagccacccttctccatagccacccatgtattatactccacaatgg-ggtgcctatttaatctggtgctaaataggtgaagcac 428302  T
Q  712 ccaccattgtggatggtct 730  Q
    |||||||||||||||||||    
T  428301 ccaccattgtggatggtct 428283  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 502
Target Start/End: Original strand, 94105 - 94203
Alignment:
Q  404 agagcaccataaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacc 502  Q
    |||||||| |||| ||  ||||||||||  || | |||||| |||||| | |||||| |||||||||||||| ||||||||||||| ||||||| ||||    
T  94105 agagcaccttaaaatgagtgcttaaattcattttatatgtccacatcagtcattttacggtaatacttaatagacatcaattttctacaatccaacacc 94203  T

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Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 664
Target Start/End: Original strand, 101626 - 101680
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttact 664  Q
    |||||||| ||||||||||||||||| ||||||| || ||| |||||||| ||||    
T  101626 agagagagggtgcttccatagccacccttctccatagccacccatatattatact 101680  T

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Target: scaffold0466 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 522
Target Start/End: Original strand, 158 - 266
Alignment:
Q  414 aaattggatgcttaaattggttctctatgtctacatcattaattttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaataaat 513  Q
    ||||||| ||||||||| ||| |||||| || || ||| | |||||| ||||||||||||||| || | |||||||||||  ||| || | |||| ||||    
T  158 aaattgggtgcttaaatgggtcctctatatccacctcactcattttacggtaatacttaataagcaccgattttctccaacacagtactttaaaagaaat 257  T
Q  514 tattaaata 522  Q
    |||||||||    
T  258 tattaaata 266  T

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Target: scaffold0281 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 730
Target Start/End: Original strand, 22281 - 22336
Alignment:
Q  675 ggtgtttatttaatgtggtattaaataagttaagcacccaccattgtggatggtct 730  Q
    ||||| ||||||||||||| ||||||| || ||||| |||||||||||||||||||    
T  22281 ggtgtctatttaatgtggtgttaaataggtgaagcatccaccattgtggatggtct 22336  T

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Target: scaffold0332 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 728
Target Start/End: Original strand, 4555 - 4673
Alignment:
Q  610 agagagagtgtgcttccatagccaccattctccacagacactcatatattttactccataataaaggtgtttatttaatgtggtattaaataagttaagc 709  Q
    |||||||| |||||||||||||| || | ||| |||  ||| ||||| || ||||  | ||| |||||| |||||||||||| | ||||||| || ||      
T  4555 agagagagggtgcttccatagccgccctcctctacaagcacccatatgttatacttaagaatgaaggtgcttatttaatgtgatgttaaataggtgaaat 4654  T
Q  710 acccaccattgtggatggt 728  Q
    |||||||||| ||||||||    
T  4655 acccaccattctggatggt 4673  T

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Target: scaffold1004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 508
Target Start/End: Complemental strand, 744 - 691
Alignment:
Q  455 attttagggtaatacttaataaacatcaattttctccaatccagcacctaaaaa 508  Q
    |||||| | ||||||||||| ||||||| |||||||||||||| | ||||||||    
T  744 attttacgataatacttaatcaacatcatttttctccaatccaacccctaaaaa 691  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 730
Target Start/End: Complemental strand, 50019 - 49986
Alignment:
Q  697 aaataagttaagcacccaccattgtggatggtct 730  Q
    |||||||| |||||||||||||||||||||||||    
T  50019 aaataagtgaagcacccaccattgtggatggtct 49986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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