View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8972_low_25 (Length: 267)
Name: NF8972_low_25
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 1956962 - 1957050
Alignment:
| Q |
163 |
catattatggatttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacat |
251 |
Q |
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| T |
1956962 |
catattatggatttgattaaattttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacat |
1957050 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 1942053 - 1942131
Alignment:
| Q |
173 |
atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacat |
251 |
Q |
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| T |
1942053 |
atttgattgaactttaatgcactttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacat |
1942131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 1928076 - 1928154
Alignment:
| Q |
173 |
atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacat |
251 |
Q |
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| T |
1928076 |
atttgattgaactttaatgcactttgtaggaggctagaaggtgatagatttttcacaagctactacaatgaggagacat |
1928154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 36774869 - 36774912
Alignment:
| Q |
81 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
124 |
Q |
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| T |
36774869 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
36774912 |
T |
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