View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8972_low_28 (Length: 237)
Name: NF8972_low_28
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 38900346 - 38900548
Alignment:
| Q |
20 |
ttgatctcaccctccaacaagccaagagtgtagctgctatcattacagagttgcttaaagaccctagtaccgacaaaaaagcaatcaaggctctcgagat |
119 |
Q |
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| T |
38900346 |
ttgatctcaccctccaacaagccaagagtgtagctgctatcattacagagttgcttaaagaccctagtaccgacaaaaaagcagtcaaggctctcgagat |
38900445 |
T |
|
| Q |
120 |
atgccaaacacaatacaaatcaatgctggatgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900446 |
atgccaaacacaatacaaatcaatgctggatgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttct |
38900545 |
T |
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| Q |
220 |
gtg |
222 |
Q |
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||| |
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| T |
38900546 |
gtg |
38900548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 38898208 - 38898410
Alignment:
| Q |
20 |
ttgatctcaccctccaacaagccaagagtgtagctgctatcattacagagttgcttaaagaccctagtaccgacaaaaaagcaatcaaggctctcgagat |
119 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || || ||||| |||| |
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| T |
38898208 |
ttgatttcaccctcaaacaagccaagagtgtagctgctatcattacagcgttgcttaatgaccctaacaccgacaaaaaagccatgaaagctcttcagat |
38898307 |
T |
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| Q |
120 |
atgccaaacacaatacaaatcaatgctggatgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttct |
219 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38898308 |
atgccaaatacaatacaattcaatgctggatgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttct |
38898407 |
T |
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| Q |
220 |
gtg |
222 |
Q |
| |
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||| |
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| T |
38898408 |
gtg |
38898410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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