View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8972_low_3 (Length: 797)
Name: NF8972_low_3
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 583
Target Start/End: Complemental strand, 42059031 - 42058467
Alignment:
| Q |
16 |
atatcctctcgaatatccaatgtttaggattgtccaataaaaatctggagattgtatatgaagataaccccacattgtnnnnnnnn-ccttaaaaattga |
114 |
Q |
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| T |
42059031 |
atatcctctcgaatatccaatgtttaggattgtcccataaaaatctggagattgtatatgaagataaccccacattgtaaaaaaaaaccttaaaaattga |
42058932 |
T |
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| Q |
115 |
atcacaagttattccattaatacattgttgctagtgaataagtagcaactatttttcatatgaatgaaaaagcgctacaattttcccattaagaataagt |
214 |
Q |
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| T |
42058931 |
atcacaagttat---------acattgttgctagtgaataagtagcaactatttttcatatgaatgaaaaagcgctacaattttcccattaagaataagt |
42058841 |
T |
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| Q |
215 |
agtagtacaaagtgattttgttaaaaataaataaatacaagtgatagtaacttttgcagttgaaagaaccca--------tattctagatagctaaaatt |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||| |
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| T |
42058840 |
agta---caaagtgattttgttaaaaataaataaatacaagtgatagtaacttttgcagttgaaagaacccaatcaaatatattatggacagctaaaatt |
42058744 |
T |
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| Q |
307 |
atcgaggccaattgcaaagctggtagaaccgtgctatgttaaaaataaataaaaacttcaagcatgatttaacctttctacaaaactatttaccatattt |
406 |
Q |
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| T |
42058743 |
atcgaggccaattgcaaagctggtagaaccgtgctatgctaaaaataaataaaaacttcaagcatgatttaacctttctacaaaactatttaccatattt |
42058644 |
T |
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| Q |
407 |
aacatgtttaccaaaagtgatatgagattcggttagattactagacaagtcggtggtattctctgaccaaattcaaactccttttgactgaaaatgcaat |
506 |
Q |
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| T |
42058643 |
aacatgtttaccaaaagtgatatgagattcggttagattactagacaagttggtggtattctctgaccaaattcaaactccttttgactgaaaatgcaat |
42058544 |
T |
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| Q |
507 |
gttagggtaaggttattattattgtattgccataatcaaacacattttgatagtactaacctacttctgtgtcttct |
583 |
Q |
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| T |
42058543 |
gttagtgtaaggttattattattgtattgccataatcaaacacattttgatagtactaacctacttttgcgtcttct |
42058467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 603 - 797
Target Start/End: Complemental strand, 42058470 - 42058278
Alignment:
| Q |
603 |
ttctgtttgtttgggcatgacaaattatgaaagtggttaataactcagtatcgcttaactaagtaactcatgtcattagttgaattgagccactcataag |
702 |
Q |
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| T |
42058470 |
ttctgtttgtttgggcatgacaaattatgaaagtggttaataactcagtatcgcttaactaagtaactcatgtcattagttgaattgagccactcataag |
42058371 |
T |
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| Q |
703 |
aaatattttgaattcaattttttatttatttnnnnnnnncagcattaaagacactctctaagctttcttttgcaataacattatttcccttgtac |
797 |
Q |
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| T |
42058370 |
aa--attttgaattcaattttttatttatttaaaaaaaacagcattaaagacactctctaagctttcttttgcaataacattatttcccttgtac |
42058278 |
T |
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