View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8972_low_31 (Length: 232)
Name: NF8972_low_31
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 29791745 - 29791542
Alignment:
| Q |
18 |
gaatctggctcatacttcaatgatcagatggtgtctcctatgtttcccgaatcgggagagagacttactccagatgccgagtttccaacctatcattctc |
117 |
Q |
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| T |
29791745 |
gaatctggctcatacttcaatgatcagatggtgtctcctatgtttcccgaattgggagagagacttactccacatgccgagtttccaacctatcattctc |
29791646 |
T |
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| Q |
118 |
agaactttcaacctcagtacagtataacagcacccaactgcaaactgagtggaactccaagtttcaggacctccgtcaagggtgacgtaactcatggatc |
217 |
Q |
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| T |
29791645 |
agaactttcaacctcagtacagtataacagcacccaactgcaaactgagtggaactccaagtttcaggacctccggtaagggtgacgtaactcatggatc |
29791546 |
T |
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| Q |
218 |
tctg |
221 |
Q |
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|||| |
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| T |
29791545 |
tctg |
29791542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 29792056 - 29791878
Alignment:
| Q |
25 |
gctcatacttcaatgatcagatggtgtctcctatgtttcccgaatcgggagagagacttactccagatgccgagtttccaacctatcattctcagaactt |
124 |
Q |
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||||||||| ||||||||||||| ||||||||||||||| |||||| || |||| | || ||||| |||| ||||||||||||||||||| |||||| || |
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| T |
29792056 |
gctcatactgcaatgatcagatgttgtctcctatgtttctcgaatcaggtgagaaaattgctccacatgctgagtttccaacctatcattatcagaaatt |
29791957 |
T |
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| Q |
125 |
tcaacctcagtacagtataacagcacccaactgcaaactgagtggaactccaagtttcaggacctccgtcaagggtgac |
203 |
Q |
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| T |
29791956 |
tcaacctcggtacagcataacagcgcctgagtgcaaactaagtggaactccaagtttcagtgcctatgtcaagggtgac |
29791878 |
T |
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